Information for CAZyme ID: BAT60649.1
Basic Information
GenBank ID | BAT60649.1 |
Family | GH17, GT2 |
Sequence Length | 974 |
UniProt ID | A0A0S3PXI8(100,100)![]() |
Average pLDDT? | 87.37 |
CAZy50 ID | 15524 |
CAZy50 Rep | Yes, BAT60649.1 |
Structure Cluster | SC_GH17_clus27, SC_GT2_clus447 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1333996 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Hyphomicrobiales |
Family | Nitrobacteraceae |
Genus | Variibacter |
Species | Variibacter gotjawalensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRVAIAVVAA AVCVHGALWA LSREQTTAPN VNGQLASVSY NSNHGPKHPD KAPVPTTEQI | 60 |
RTDLKTFAPY TKAIRTYSST RGGEKVAPVA NEFGLRVTQG IWLDDDPLRN EREIKAARGL | 120 |
VRANRNINSL VVGNESVYRG ETIFVGLNAA ERAKLGLKPV EQLSDDEREK ESLILTPAQK | 180 |
DLLLTDDERG RIAGAQEKDK AAQNGVTQFL NGKGPEEIRV REAINVERLI RVIQRVKRDL | 240 |
QIPVTTGEIF SVWNAHPNLV TAVDYIATHI LPYWNGVEEA NVVSATIGEF NGLRNQYPGK | 300 |
RVVIAEFGWP SAGYNFKDAT PGRQQQAEIL RSFVARAEQM GIDYNIVEAI DQQWKVTEGS | 360 |
VGPYWGMFDG NLKAKFAWSG PILDPEHWRL AGIAILVGVL LSLPILAMAS VTVGQAALLS | 420 |
LAAHAVGGWV ATVFAYWNGH YFVPGAVFAL VTGMILMIPL VLIAMARIEE IAAVAFGRKG | 480 |
RRTVGGPALA NANPNYTPKV SIHIPAYREQ PEMLKQTLDS LAAMTYPNWE AVVIINNTPD | 540 |
PAFVTPIEEH CKLLGDRFKF INAEKVEGFK AGALRIALAA TAPDAEIIGV IDADYAVTPD | 600 |
WLTDLAPTFA DARVGIVQAP QDHRDGNRSL MHHAMGGEYS GFFDIGMVER NEVNAIVIHG | 660 |
TMCLIRRSAL DAAGSWPDDT ICEDTDLGLT ILEQGWIAHY TNKRYGYGLL PDTFEAFKKQ | 720 |
RHRWAYGGLH IVRKHWRRFL PGRSQLTRDQ RREYIFGWIS WMGAEALGVL VAIFNLIWVP | 780 |
IVAFVGIAVP DKVLTLPIVA AFTVTMLHFI MLYRLRVDIP KRQAIASAFA AMSLQFTVAK | 840 |
AMFDGIVKDG LPFNVTAKGG AKKKAAKFQA FWESIIGGLL IAGSITLIVT NYQQITEIYI | 900 |
FAFVLVVQSL PFLSAVAMAL LENSKFNEFA YWTNLRARMA ARLAPISARL PRLGNRTQVP | 960 |
APLPVSAKQP ETVQ | 974 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.37 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MRVAIAVVAA AVCVHGALWA LSREQTTAPN VNGQLASVSY NSNHGPKHPD KAPVPTTEQI | 60 |
RTDLKTFAPY TKAIRTYSST RGGEKVAPVA NEFGLRVTQG IWLDDDPLRN EREIKAARGL | 120 |
VRANRNINSL VVGNESVYRG ETIFVGLNAA ERAKLGLKPV EQLSDDEREK ESLILTPAQK | 180 |
DLLLTDDERG RIAGAQEKDK AAQNGVTQFL NGKGPEEIRV REAINVERLI RVIQRVKRDL | 240 |
QIPVTTGEIF SVWNAHPNLV TAVDYIATHI LPYWNGVEEA NVVSATIGEF NGLRNQYPGK | 300 |
RVVIAEFGWP SAGYNFKDAT PGRQQQAEIL RSFVARAEQM GIDYNIVEAI DQQWKVTEGS | 360 |
VGPYWGMFDG NLKAKFAWSG PILDPEHWRL AGIAILVGVL LSLPILAMAS VTVGQAALLS | 420 |
LAAHAVGGWV ATVFAYWNGH YFVPGAVFAL VTGMILMIPL VLIAMARIEE IAAVAFGRKG | 480 |
RRTVGGPALA NANPNYTPKV SIHIPAYREQ PEMLKQTLDS LAAMTYPNWE AVVIINNTPD | 540 |
PAFVTPIEEH CKLLGDRFKF INAEKVEGFK AGALRIALAA TAPDAEIIGV IDADYAVTPD | 600 |
WLTDLAPTFA DARVGIVQAP QDHRDGNRSL MHHAMGGEYS GFFDIGMVER NEVNAIVIHG | 660 |
TMCLIRRSAL DAAGSWPDDT ICEDTDLGLT ILEQGWIAHY TNKRYGYGLL PDTFEAFKKQ | 720 |
RHRWAYGGLH IVRKHWRRFL PGRSQLTRDQ RREYIFGWIS WMGAEALGVL VAIFNLIWVP | 780 |
IVAFVGIAVP DKVLTLPIVA AFTVTMLHFI MLYRLRVDIP KRQAIASAFA AMSLQFTVAK | 840 |
AMFDGIVKDG LPFNVTAKGG AKKKAAKFQA FWESIIGGLL IAGSITLIVT NYQQITEIYI | 900 |
FAFVLVVQSL PFLSAVAMAL LENSKFNEFA YWTNLRARMA ARLAPISARL PRLGNRTQVP | 960 |
APLPVSAKQP ETVQ | 974 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.