CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: BAT60649.1

Basic Information

GenBank IDBAT60649.1
FamilyGH17, GT2
Sequence Length974
UniProt IDA0A0S3PXI8(100,100)Download
Average pLDDT?87.37
CAZy50 ID15524
CAZy50 RepYes, BAT60649.1
Structure ClusterSC_GH17_clus27, SC_GT2_clus447
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1333996
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusVariibacter
SpeciesVariibacter gotjawalensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVAIAVVAA  AVCVHGALWA  LSREQTTAPN  VNGQLASVSY  NSNHGPKHPD  KAPVPTTEQI60
RTDLKTFAPY  TKAIRTYSST  RGGEKVAPVA  NEFGLRVTQG  IWLDDDPLRN  EREIKAARGL120
VRANRNINSL  VVGNESVYRG  ETIFVGLNAA  ERAKLGLKPV  EQLSDDEREK  ESLILTPAQK180
DLLLTDDERG  RIAGAQEKDK  AAQNGVTQFL  NGKGPEEIRV  REAINVERLI  RVIQRVKRDL240
QIPVTTGEIF  SVWNAHPNLV  TAVDYIATHI  LPYWNGVEEA  NVVSATIGEF  NGLRNQYPGK300
RVVIAEFGWP  SAGYNFKDAT  PGRQQQAEIL  RSFVARAEQM  GIDYNIVEAI  DQQWKVTEGS360
VGPYWGMFDG  NLKAKFAWSG  PILDPEHWRL  AGIAILVGVL  LSLPILAMAS  VTVGQAALLS420
LAAHAVGGWV  ATVFAYWNGH  YFVPGAVFAL  VTGMILMIPL  VLIAMARIEE  IAAVAFGRKG480
RRTVGGPALA  NANPNYTPKV  SIHIPAYREQ  PEMLKQTLDS  LAAMTYPNWE  AVVIINNTPD540
PAFVTPIEEH  CKLLGDRFKF  INAEKVEGFK  AGALRIALAA  TAPDAEIIGV  IDADYAVTPD600
WLTDLAPTFA  DARVGIVQAP  QDHRDGNRSL  MHHAMGGEYS  GFFDIGMVER  NEVNAIVIHG660
TMCLIRRSAL  DAAGSWPDDT  ICEDTDLGLT  ILEQGWIAHY  TNKRYGYGLL  PDTFEAFKKQ720
RHRWAYGGLH  IVRKHWRRFL  PGRSQLTRDQ  RREYIFGWIS  WMGAEALGVL  VAIFNLIWVP780
IVAFVGIAVP  DKVLTLPIVA  AFTVTMLHFI  MLYRLRVDIP  KRQAIASAFA  AMSLQFTVAK840
AMFDGIVKDG  LPFNVTAKGG  AKKKAAKFQA  FWESIIGGLL  IAGSITLIVT  NYQQITEIYI900
FAFVLVVQSL  PFLSAVAMAL  LENSKFNEFA  YWTNLRARMA  ARLAPISARL  PRLGNRTQVP960
APLPVSAKQP  ETVQ974

Predicted 3D structure by AlphaFold2 with pLDDT = 87.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRVAIAVVAA  AVCVHGALWA  LSREQTTAPN  VNGQLASVSY  NSNHGPKHPD  KAPVPTTEQI60
RTDLKTFAPY  TKAIRTYSST  RGGEKVAPVA  NEFGLRVTQG  IWLDDDPLRN  EREIKAARGL120
VRANRNINSL  VVGNESVYRG  ETIFVGLNAA  ERAKLGLKPV  EQLSDDEREK  ESLILTPAQK180
DLLLTDDERG  RIAGAQEKDK  AAQNGVTQFL  NGKGPEEIRV  REAINVERLI  RVIQRVKRDL240
QIPVTTGEIF  SVWNAHPNLV  TAVDYIATHI  LPYWNGVEEA  NVVSATIGEF  NGLRNQYPGK300
RVVIAEFGWP  SAGYNFKDAT  PGRQQQAEIL  RSFVARAEQM  GIDYNIVEAI  DQQWKVTEGS360
VGPYWGMFDG  NLKAKFAWSG  PILDPEHWRL  AGIAILVGVL  LSLPILAMAS  VTVGQAALLS420
LAAHAVGGWV  ATVFAYWNGH  YFVPGAVFAL  VTGMILMIPL  VLIAMARIEE  IAAVAFGRKG480
RRTVGGPALA  NANPNYTPKV  SIHIPAYREQ  PEMLKQTLDS  LAAMTYPNWE  AVVIINNTPD540
PAFVTPIEEH  CKLLGDRFKF  INAEKVEGFK  AGALRIALAA  TAPDAEIIGV  IDADYAVTPD600
WLTDLAPTFA  DARVGIVQAP  QDHRDGNRSL  MHHAMGGEYS  GFFDIGMVER  NEVNAIVIHG660
TMCLIRRSAL  DAAGSWPDDT  ICEDTDLGLT  ILEQGWIAHY  TNKRYGYGLL  PDTFEAFKKQ720
RHRWAYGGLH  IVRKHWRRFL  PGRSQLTRDQ  RREYIFGWIS  WMGAEALGVL  VAIFNLIWVP780
IVAFVGIAVP  DKVLTLPIVA  AFTVTMLHFI  MLYRLRVDIP  KRQAIASAFA  AMSLQFTVAK840
AMFDGIVKDG  LPFNVTAKGG  AKKKAAKFQA  FWESIIGGLL  IAGSITLIVT  NYQQITEIYI900
FAFVLVVQSL  PFLSAVAMAL  LENSKFNEFA  YWTNLRARMA  ARLAPISARL  PRLGNRTQVP960
APLPVSAKQP  ETVQ974

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(501-671)+GT2(587-814)

MRVAIAVVAA  AVCVHGALWA  LSREQTTAPN  VNGQLASVSY  NSNHGPKHPD  KAPVPTTEQI60
RTDLKTFAPY  TKAIRTYSST  RGGEKVAPVA  NEFGLRVTQG  IWLDDDPLRN  EREIKAARGL120
VRANRNINSL  VVGNESVYRG  ETIFVGLNAA  ERAKLGLKPV  EQLSDDEREK  ESLILTPAQK180
DLLLTDDERG  RIAGAQEKDK  AAQNGVTQFL  NGKGPEEIRV  REAINVERLI  RVIQRVKRDL240
QIPVTTGEIF  SVWNAHPNLV  TAVDYIATHI  LPYWNGVEEA  NVVSATIGEF  NGLRNQYPGK300
RVVIAEFGWP  SAGYNFKDAT  PGRQQQAEIL  RSFVARAEQM  GIDYNIVEAI  DQQWKVTEGS360
VGPYWGMFDG  NLKAKFAWSG  PILDPEHWRL  AGIAILVGVL  LSLPILAMAS  VTVGQAALLS420
LAAHAVGGWV  ATVFAYWNGH  YFVPGAVFAL  VTGMILMIPL  VLIAMARIEE  IAAVAFGRKG480
RRTVGGPALA  NANPNYTPKV  SIHIPAYREQ  PEMLKQTLDS  LAAMTYPNWE  AVVIINNTPD540
PAFVTPIEEH  CKLLGDRFKF  INAEKVEGFK  AGALRIALAA  TAPDAEIIGV  IDADYAVTPD600
WLTDLAPTFA  DARVGIVQAP  QDHRDGNRSL  MHHAMGGEYS  GFFDIGMVER  NEVNAIVIHG660
TMCLIRRSAL  DAAGSWPDDT  ICEDTDLGLT  ILEQGWIAHY  TNKRYGYGLL  PDTFEAFKKQ720
RHRWAYGGLH  IVRKHWRRFL  PGRSQLTRDQ  RREYIFGWIS  WMGAEALGVL  VAIFNLIWVP780
IVAFVGIAVP  DKVLTLPIVA  AFTVTMLHFI  MLYRLRVDIP  KRQAIASAFA  AMSLQFTVAK840
AMFDGIVKDG  LPFNVTAKGG  AKKKAAKFQA  FWESIIGGLL  IAGSITLIVT  NYQQITEIYI900
FAFVLVVQSL  PFLSAVAMAL  LENSKFNEFA  YWTNLRARMA  ARLAPISARL  PRLGNRTQVP960
APLPVSAKQP  ETVQ974

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help