CAZyme3D

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Entry ID

Information for CAZyme ID: SGZ52553.1

Basic Information

GenBank IDSGZ52553.1
FamilyGH5_9
Sequence Length458
UniProt IDA0A1L0BME8(100,100)Download
Average pLDDT?73.33
CAZy50 ID78062
CAZy50 RepYes, SGZ52553.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID45354
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilyMetschnikowiaceae
GenusCandida/Metschnikowiaceae
Species[Candida] intermedia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLVWSLLSLC  LSLKVVMGFN  YTVANVTSFS  NITDNYNYTN  SHTSNDFQYM  GVALGGWLLL60
EPYITPSLFL  EFNATSKNVS  DIPDDEYHYC  EYLGQDEAIK  RLSNHWDTFY  NESDFEAIKN120
YGFNMVRIPI  GYWAFDMLPE  DPYVLGAQEY  LDKAIDWAHK  YDLKPGWQDK  QEYVNLTLLV180
LQQIYIKYGS  QEFSKEYGDT  ILGIEVLNEP  LGPKLDMSKL  KSFYNQSYLD  ARAYQDTNNT240
IVFHDAFQSA  GYWDNFLDSR  GKLSGRLQNY  NIMIDHHHYE  VFSSGQLGVS  IAQRITNIKN300
YSSGLGDESS  HPSVVGEWSA  ALTDCTPWLN  SVHYGSRWEG  TYPFTNNPIE  DKSIGTCANI360
NDWSKWTDQH  KRVTQKFIEI  QLDQYESNTK  GWIFWCYKTE  TTIEWDFKRL  VEFDLFPQPF420
SNRTYIKNGT  DTAPDKSGAS  QVGMSMVVVA  GVMVALIV458

Predicted 3D structure by AlphaFold2 with pLDDT = 73.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLVWSLLSLC  LSLKVVMGFN  YTVANVTSFS  NITDNYNYTN  SHTSNDFQYM  GVALGGWLLL60
EPYITPSLFL  EFNATSKNVS  DIPDDEYHYC  EYLGQDEAIK  RLSNHWDTFY  NESDFEAIKN120
YGFNMVRIPI  GYWAFDMLPE  DPYVLGAQEY  LDKAIDWAHK  YDLKPGWQDK  QEYVNLTLLV180
LQQIYIKYGS  QEFSKEYGDT  ILGIEVLNEP  LGPKLDMSKL  KSFYNQSYLD  ARAYQDTNNT240
IVFHDAFQSA  GYWDNFLDSR  GKLSGRLQNY  NIMIDHHHYE  VFSSGQLGVS  IAQRITNIKN300
YSSGLGDESS  HPSVVGEWSA  ALTDCTPWLN  SVHYGSRWEG  TYPFTNNPIE  DKSIGTCANI360
NDWSKWTDQH  KRVTQKFIEI  QLDQYESNTK  GWIFWCYKTE  TTIEWDFKRL  VEFDLFPQPF420
SNRTYIKNGT  DTAPDKSGAS  QVGMSMVVVA  GVMVALIV458

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_9(165-400)

MLVWSLLSLC  LSLKVVMGFN  YTVANVTSFS  NITDNYNYTN  SHTSNDFQYM  GVALGGWLLL60
EPYITPSLFL  EFNATSKNVS  DIPDDEYHYC  EYLGQDEAIK  RLSNHWDTFY  NESDFEAIKN120
YGFNMVRIPI  GYWAFDMLPE  DPYVLGAQEY  LDKAIDWAHK  YDLKPGWQDK  QEYVNLTLLV180
LQQIYIKYGS  QEFSKEYGDT  ILGIEVLNEP  LGPKLDMSKL  KSFYNQSYLD  ARAYQDTNNT240
IVFHDAFQSA  GYWDNFLDSR  GKLSGRLQNY  NIMIDHHHYE  VFSSGQLGVS  IAQRITNIKN300
YSSGLGDESS  HPSVVGEWSA  ALTDCTPWLN  SVHYGSRWEG  TYPFTNNPIE  DKSIGTCANI360
NDWSKWTDQH  KRVTQKFIEI  QLDQYESNTK  GWIFWCYKTE  TTIEWDFKRL  VEFDLFPQPF420
SNRTYIKNGT  DTAPDKSGAS  QVGMSMVVVA  GVMVALIV458

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help