CAZyme3D

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Entry ID

Information for CAZyme ID: SFV73709.1

Basic Information

GenBank IDSFV73709.1
FamilyGT2
Sequence Length490
UniProt IDA0A1K1LG71(100,100)Download
Average pLDDT?84.50
CAZy50 ID71026
CAZy50 RepYes, SFV73709.1
Structure ClusterSC_GT2_clus1289
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID901
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio piger

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPSKHAMTIL  SETTAFARSL  LSRPLLRFGM  VGSSATLCYL  WAGHLLVSWA  HWPAPAAHAL60
AGLLALLAAY  AGHCFWTFDI  RGGDHARMLP  RFVLVQGAGL  WLGDLFARGL  GWCGVPRGPA120
LSAASLAAPL  FLYLACRLWV  FRPVRSMNLS  SPSSRGTSMH  HVPTSEAPVV  SVIMNCLNSA180
EHLQEALDSL  AAQTFTDFEV  IFWDNGSTDS  SPRIARGHAG  LAGRLRYFRG  EETVPLGAAR240
NLAIAQSRGR  HVAFLDCDDL  WRPEKLARQV  ACFDADPHVG  LVCTDTEIFD  GKHVLKRLFA300
ESRPQRGRAF  AALMERQWIS  MSSAMLSRTA  LDSVVCPPAR  EGGAPVWFDE  GLNVCEEADL360
FYRVAHDWEL  DHVDAPLTLW  RVHGNNTTFR  KFGQFADETL  YILEKHRRLW  PGYDAAHPEL420
VSLLTRRAAF  QKAVSLWREG  RGSEARAVIR  PWRDGSRKYR  LFWWASHLPG  ACFDLAARLY480
FALPSVIRRR  490

Predicted 3D structure by AlphaFold2 with pLDDT = 84.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPSKHAMTIL  SETTAFARSL  LSRPLLRFGM  VGSSATLCYL  WAGHLLVSWA  HWPAPAAHAL60
AGLLALLAAY  AGHCFWTFDI  RGGDHARMLP  RFVLVQGAGL  WLGDLFARGL  GWCGVPRGPA120
LSAASLAAPL  FLYLACRLWV  FRPVRSMNLS  SPSSRGTSMH  HVPTSEAPVV  SVIMNCLNSA180
EHLQEALDSL  AAQTFTDFEV  IFWDNGSTDS  SPRIARGHAG  LAGRLRYFRG  EETVPLGAAR240
NLAIAQSRGR  HVAFLDCDDL  WRPEKLARQV  ACFDADPHVG  LVCTDTEIFD  GKHVLKRLFA300
ESRPQRGRAF  AALMERQWIS  MSSAMLSRTA  LDSVVCPPAR  EGGAPVWFDE  GLNVCEEADL360
FYRVAHDWEL  DHVDAPLTLW  RVHGNNTTFR  KFGQFADETL  YILEKHRRLW  PGYDAAHPEL420
VSLLTRRAAF  QKAVSLWREG  RGSEARAVIR  PWRDGSRKYR  LFWWASHLPG  ACFDLAARLY480
FALPSVIRRR  490

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(171-332)

MPSKHAMTIL  SETTAFARSL  LSRPLLRFGM  VGSSATLCYL  WAGHLLVSWA  HWPAPAAHAL60
AGLLALLAAY  AGHCFWTFDI  RGGDHARMLP  RFVLVQGAGL  WLGDLFARGL  GWCGVPRGPA120
LSAASLAAPL  FLYLACRLWV  FRPVRSMNLS  SPSSRGTSMH  HVPTSEAPVV  SVIMNCLNSA180
EHLQEALDSL  AAQTFTDFEV  IFWDNGSTDS  SPRIARGHAG  LAGRLRYFRG  EETVPLGAAR240
NLAIAQSRGR  HVAFLDCDDL  WRPEKLARQV  ACFDADPHVG  LVCTDTEIFD  GKHVLKRLFA300
ESRPQRGRAF  AALMERQWIS  MSSAMLSRTA  LDSVVCPPAR  EGGAPVWFDE  GLNVCEEADL360
FYRVAHDWEL  DHVDAPLTLW  RVHGNNTTFR  KFGQFADETL  YILEKHRRLW  PGYDAAHPEL420
VSLLTRRAAF  QKAVSLWREG  RGSEARAVIR  PWRDGSRKYR  LFWWASHLPG  ACFDLAARLY480
FALPSVIRRR  490

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help