CAZyme3D

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Entry ID

Information for CAZyme ID: SET95995.1

Basic Information

GenBank IDSET95995.1
FamilyGT99
Sequence Length558
UniProt IDSET95995.1(MOD)Download
Average pLDDT?84.98
CAZy50 ID58289
CAZy50 RepYes, SET95995.1
Structure ClusterSC_GT99_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1297793
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusLacrimispora
SpeciesLacrimispora sphenoides

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFVPIIITLD  PAGETPWLWV  FHKMASMGKG  YKWPIVAQKE  YFAKYKTFEV  PSIWKEWFDV60
PLDKEGVLEN  IIPIKIPEYI  INSYIEKYPS  QTDAYVNSFV  EEWSEIVEYL  YKRLNQIVVD120
EGKSIEGLIL  FRYYRCFESL  AKKLNVPTFY  FELGLRVPDY  RNTFYWSKSG  LQGKAGFDER180
YTKFHKEFMV  NPVLALDAKE  ILALFLKEDK  LDYLRMNMSK  EYEFGIFGGY  SIPMASTAFN240
QVTLAEELML  VRKWCSDDKI  IIKKHPGDPL  DAAPRFPNIE  KGENTSAQFI  QKCRRIVCAG300
SNTAFEAALY  GVPAYDLGWS  QYSFISNLSL  KELTDNLPDK  LKLSFVAFGC  LAPLELLKDI360
DYIRKVIMLD  SELEIYKLNL  EYYLRDYGLT  YEQLAEADNR  LELILKSRLH  KPYEHLKLIP420
RGDLTPLAEL  QIELKDVQRQ  LTCLLEKEGE  QTQISSKLDE  EFECIKKRNS  RLESELLQIK480
EKYRILENEN  SILQVSNKNS  LNDLNVLNDL  ISELKMKLQD  MEQLCSEKDA  LYHQILESTS540
YRCTKPLRVF  ADLFKNIV558

Predicted 3D structure by AlphaFold2 with pLDDT = 84.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFVPIIITLD  PAGETPWLWV  FHKMASMGKG  YKWPIVAQKE  YFAKYKTFEV  PSIWKEWFDV60
PLDKEGVLEN  IIPIKIPEYI  INSYIEKYPS  QTDAYVNSFV  EEWSEIVEYL  YKRLNQIVVD120
EGKSIEGLIL  FRYYRCFESL  AKKLNVPTFY  FELGLRVPDY  RNTFYWSKSG  LQGKAGFDER180
YTKFHKEFMV  NPVLALDAKE  ILALFLKEDK  LDYLRMNMSK  EYEFGIFGGY  SIPMASTAFN240
QVTLAEELML  VRKWCSDDKI  IIKKHPGDPL  DAAPRFPNIE  KGENTSAQFI  QKCRRIVCAG300
SNTAFEAALY  GVPAYDLGWS  QYSFISNLSL  KELTDNLPDK  LKLSFVAFGC  LAPLELLKDI360
DYIRKVIMLD  SELEIYKLNL  EYYLRDYGLT  YEQLAEADNR  LELILKSRLH  KPYEHLKLIP420
RGDLTPLAEL  QIELKDVQRQ  LTCLLEKEGE  QTQISSKLDE  EFECIKKRNS  RLESELLQIK480
EKYRILENEN  SILQVSNKNS  LNDLNVLNDL  ISELKMKLQD  MEQLCSEKDA  LYHQILESTS540
YRCTKPLRVF  ADLFKNIV558

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT99(14-384)

MFVPIIITLD  PAGETPWLWV  FHKMASMGKG  YKWPIVAQKE  YFAKYKTFEV  PSIWKEWFDV60
PLDKEGVLEN  IIPIKIPEYI  INSYIEKYPS  QTDAYVNSFV  EEWSEIVEYL  YKRLNQIVVD120
EGKSIEGLIL  FRYYRCFESL  AKKLNVPTFY  FELGLRVPDY  RNTFYWSKSG  LQGKAGFDER180
YTKFHKEFMV  NPVLALDAKE  ILALFLKEDK  LDYLRMNMSK  EYEFGIFGGY  SIPMASTAFN240
QVTLAEELML  VRKWCSDDKI  IIKKHPGDPL  DAAPRFPNIE  KGENTSAQFI  QKCRRIVCAG300
SNTAFEAALY  GVPAYDLGWS  QYSFISNLSL  KELTDNLPDK  LKLSFVAFGC  LAPLELLKDI360
DYIRKVIMLD  SELEIYKLNL  EYYLRDYGLT  YEQLAEADNR  LELILKSRLH  KPYEHLKLIP420
RGDLTPLAEL  QIELKDVQRQ  LTCLLEKEGE  QTQISSKLDE  EFECIKKRNS  RLESELLQIK480
EKYRILENEN  SILQVSNKNS  LNDLNVLNDL  ISELKMKLQD  MEQLCSEKDA  LYHQILESTS540
YRCTKPLRVF  ADLFKNIV558

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help