Information for CAZyme ID: SDU75425.1
Basic Information
| GenBank ID | SDU75425.1 |
| Family | CBM13 |
| Sequence Length | 656 |
| UniProt ID | A0A1H2L3V6(100,100) |
| Average pLDDT? | 85.59 |
| CAZy50 ID | 44347 |
| CAZy50 Rep | Yes, SDU75425.1 |
| Structure Cluster | SC_CBM13_clus58 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 419479 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Jiangellales |
| Family | Jiangellaceae |
| Genus | Jiangella |
| Species | Jiangella alkaliphila |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRLRSLMTTV LLVVTTLLAA PVATQSANAN TLETFTLPGA DANGDINHAN IVTAFPSVDW | 60 |
| ETLDRLYIPA GQYRSIHLGG LPDRDADRPL VITNSGGQVR VGGENHPYVF AVNGGRNWVL | 120 |
| TGRYDAAAQT GHTSYRGHAD GDWADSQDTY GIVVDDEFSR QGGIGLSVSS GASHFELDMI | 180 |
| EIRRLEFAGL MMKTDNTGAA TMRSVRVHDL YIHDTGAEGI YMGSTQAQPQ HIFENVEIYN | 240 |
| NRVLRTGTEA LQVGQAGDQI AVHHNVFGPA ATRWRSAFSH WQDGNIQWGQ RYGSAAFHDN | 300 |
| VVIGTGDLFI EFFPTTVSGD PYCPSDTVTF EDNYFADTSY GGVFTHAGGT GVDVEFTGNT | 360 |
| WRGFNFNYNE VYPNVTAPAD MFSPGDTTSV THRWTDNVID GPPLQATSRP NVTDTNTTYA | 420 |
| TVPRVQFRDF MGSYLDQDYR RLEWWTDRET LQDGQPVMVY DEGDVVVHGG TLYEALEDNQ | 480 |
| EVPPGSSTAV WQALPQPSDD VRLTAASPHA GVGVGDNVTG YLVPDPDPVV PSGQIVGIAS | 540 |
| KCVTVENGNT ANTTPIELEP CGAGASQTWS LPGDGSIRAL GKCLDVQWGL TPNGTVIQLY | 600 |
| DCIGSGSQQW VEQTDGELLN PQSGRCLSTT GGSSANGTRL IIWDCLTRAD QVWALP | 656 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.59 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MRLRSLMTTV LLVVTTLLAA PVATQSANAN TLETFTLPGA DANGDINHAN IVTAFPSVDW | 60 |
| ETLDRLYIPA GQYRSIHLGG LPDRDADRPL VITNSGGQVR VGGENHPYVF AVNGGRNWVL | 120 |
| TGRYDAAAQT GHTSYRGHAD GDWADSQDTY GIVVDDEFSR QGGIGLSVSS GASHFELDMI | 180 |
| EIRRLEFAGL MMKTDNTGAA TMRSVRVHDL YIHDTGAEGI YMGSTQAQPQ HIFENVEIYN | 240 |
| NRVLRTGTEA LQVGQAGDQI AVHHNVFGPA ATRWRSAFSH WQDGNIQWGQ RYGSAAFHDN | 300 |
| VVIGTGDLFI EFFPTTVSGD PYCPSDTVTF EDNYFADTSY GGVFTHAGGT GVDVEFTGNT | 360 |
| WRGFNFNYNE VYPNVTAPAD MFSPGDTTSV THRWTDNVID GPPLQATSRP NVTDTNTTYA | 420 |
| TVPRVQFRDF MGSYLDQDYR RLEWWTDRET LQDGQPVMVY DEGDVVVHGG TLYEALEDNQ | 480 |
| EVPPGSSTAV WQALPQPSDD VRLTAASPHA GVGVGDNVTG YLVPDPDPVV PSGQIVGIAS | 540 |
| KCVTVENGNT ANTTPIELEP CGAGASQTWS LPGDGSIRAL GKCLDVQWGL TPNGTVIQLY | 600 |
| DCIGSGSQQW VEQTDGELLN PQSGRCLSTT GGSSANGTRL IIWDCLTRAD QVWALP | 656 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.