CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: SDU14417.1

Basic Information

GenBank IDSDU14417.1
FamilyGH163
Sequence Length726
UniProt IDA0A1H2G4C1(100,100)Download
Average pLDDT?92.32
CAZy50 ID35537
CAZy50 RepYes, SDU14417.1
Structure ClusterSC_GH163_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1336804
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter sp. Hel1_33_78

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLKKYISIG  MFFLSLFSCA  QKNVILYSQK  QKIYPKINIP  LSADILVSNA  ANEFNNNFRS60
ITGQYLNIER  SNNLNKNYTY  IILRVNPPQK  ESYCLYKKDR  NITIQATTPA  NLVFGLNAFF120
KKYTSLNFKE  KNKKGKENKG  RIELSIPNRF  SSCSSPDFEY  REPYFSPNFN  PDFRAWNKTN180
YLELEWGIWG  HNISKIVKEY  NLPQSIYAKV  GKRRVESQYC  FTSDSLFKYI  NEKVKIIYDS240
DHALDKYMIL  PNDNSIVCTC  ASCKAVGNTT  KDAAPAVFTF  LNKLAKNHKK  SSFFTASYFT300
VKKIPQFKAE  KNVGLFYSTI  DIQKGIPIED  TQYIENFEEA  IKRWKNYLEK  IYIWDYAVNF360
DNYFDIYPSL  KVTQKNLKLY  KKLGVKGVFL  HGSEYQYSTF  QDLKSNIFSK  LLWNTDINVD420
QAIYTYFHEK  FPNKLASALT  DYYSFITDSF  FINKEELAIY  SGINKTVKKY  LNPKVFFSFY480
DEFDSNTERN  KYDIDFRKIA  TALTFLKLEV  MRVYGIGTYG  FATINNNEEI  IVKNEAGIML540
DKLKSFSKSV  NIKTYNELKY  PIDDYIKSWK  ETIYKYHKRK  HYFYKKPFEI  LSNLDEDYTN600
ISVLNNGTFG  FKDYNTNWHI  CSIDNLTLKI  EKKHIKGSKK  ITFSFLQDTK  HAIYYPSVIE660
ILDTNYNLIK  KLNPLVDKTD  LATKEMSINL  PSKFDDEQLP  DTFIVKISRS  NVAGKNALAC720
DEIIFN726

Predicted 3D structure by AlphaFold2 with pLDDT = 92.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNLKKYISIG  MFFLSLFSCA  QKNVILYSQK  QKIYPKINIP  LSADILVSNA  ANEFNNNFRS60
ITGQYLNIER  SNNLNKNYTY  IILRVNPPQK  ESYCLYKKDR  NITIQATTPA  NLVFGLNAFF120
KKYTSLNFKE  KNKKGKENKG  RIELSIPNRF  SSCSSPDFEY  REPYFSPNFN  PDFRAWNKTN180
YLELEWGIWG  HNISKIVKEY  NLPQSIYAKV  GKRRVESQYC  FTSDSLFKYI  NEKVKIIYDS240
DHALDKYMIL  PNDNSIVCTC  ASCKAVGNTT  KDAAPAVFTF  LNKLAKNHKK  SSFFTASYFT300
VKKIPQFKAE  KNVGLFYSTI  DIQKGIPIED  TQYIENFEEA  IKRWKNYLEK  IYIWDYAVNF360
DNYFDIYPSL  KVTQKNLKLY  KKLGVKGVFL  HGSEYQYSTF  QDLKSNIFSK  LLWNTDINVD420
QAIYTYFHEK  FPNKLASALT  DYYSFITDSF  FINKEELAIY  SGINKTVKKY  LNPKVFFSFY480
DEFDSNTERN  KYDIDFRKIA  TALTFLKLEV  MRVYGIGTYG  FATINNNEEI  IVKNEAGIML540
DKLKSFSKSV  NIKTYNELKY  PIDDYIKSWK  ETIYKYHKRK  HYFYKKPFEI  LSNLDEDYTN600
ISVLNNGTFG  FKDYNTNWHI  CSIDNLTLKI  EKKHIKGSKK  ITFSFLQDTK  HAIYYPSVIE660
ILDTNYNLIK  KLNPLVDKTD  LATKEMSINL  PSKFDDEQLP  DTFIVKISRS  NVAGKNALAC720
DEIIFN726

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(206-442)

MNLKKYISIG  MFFLSLFSCA  QKNVILYSQK  QKIYPKINIP  LSADILVSNA  ANEFNNNFRS60
ITGQYLNIER  SNNLNKNYTY  IILRVNPPQK  ESYCLYKKDR  NITIQATTPA  NLVFGLNAFF120
KKYTSLNFKE  KNKKGKENKG  RIELSIPNRF  SSCSSPDFEY  REPYFSPNFN  PDFRAWNKTN180
YLELEWGIWG  HNISKIVKEY  NLPQSIYAKV  GKRRVESQYC  FTSDSLFKYI  NEKVKIIYDS240
DHALDKYMIL  PNDNSIVCTC  ASCKAVGNTT  KDAAPAVFTF  LNKLAKNHKK  SSFFTASYFT300
VKKIPQFKAE  KNVGLFYSTI  DIQKGIPIED  TQYIENFEEA  IKRWKNYLEK  IYIWDYAVNF360
DNYFDIYPSL  KVTQKNLKLY  KKLGVKGVFL  HGSEYQYSTF  QDLKSNIFSK  LLWNTDINVD420
QAIYTYFHEK  FPNKLASALT  DYYSFITDSF  FINKEELAIY  SGINKTVKKY  LNPKVFFSFY480
DEFDSNTERN  KYDIDFRKIA  TALTFLKLEV  MRVYGIGTYG  FATINNNEEI  IVKNEAGIML540
DKLKSFSKSV  NIKTYNELKY  PIDDYIKSWK  ETIYKYHKRK  HYFYKKPFEI  LSNLDEDYTN600
ISVLNNGTFG  FKDYNTNWHI  CSIDNLTLKI  EKKHIKGSKK  ITFSFLQDTK  HAIYYPSVIE660
ILDTNYNLIK  KLNPLVDKTD  LATKEMSINL  PSKFDDEQLP  DTFIVKISRS  NVAGKNALAC720
DEIIFN726

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help