Information for CAZyme ID: SDS71223.1
Basic Information
| GenBank ID | SDS71223.1 |
| Family | GT2, GT4 |
| Sequence Length | 868 |
| UniProt ID | A0A1H1UFH2(100,100) |
| Average pLDDT? | 84.87 |
| CAZy50 ID | 21500 |
| CAZy50 Rep | Yes, SDS71223.1 |
| Structure Cluster | SC_GT2_clus188, SC_GT4_clus678 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 589382 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Agromyces |
| Species | Agromyces flavus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MHSEGADSRF KQETPVSSTP DVSIVIPLHD DEEWVASALE SCTRQTLRNI EIICVDDAST | 60 |
| DGTAAVVDAH RRKDPRIRLL KQDANLSAFQ ARRRGVEAAA APYVLFLDGD DELAPDAARV | 120 |
| ALRRARAEAA DIVGFGVEVV KPDGSTGGEF EASLQPRHRT LTGAGIVPGI FPQGKVAQGQ | 180 |
| LWRNLYRREL LLEAYSGLPD DLILFRANDI PIAFLAFARA RRYASTTKHL YRYFFRRGRS | 240 |
| GHQVVDLDAF RFYLGAVDSI ECIEESIREL GERLEDPADL FASYESARLS IIGSVLGYCI | 300 |
| RNVSKKLQPD CVSLLGERVG DVDMIRAAAS FRPDARALLS SRAEAPEAPR NVQRVLIATH | 360 |
| DMKTGGVQGV VAAQSRYLVE NGLSVTVAVH KSDDAVHDLP PEVRLIVIDG TTLAGKLRSW | 420 |
| LEICKKHDVV IDHNVLYNEN WPFYALIART IGVPTIGWLH NFALRTVYDF GTRGSFLRAH | 480 |
| LPLLWTVVVL STEDVSFWKL QGIERVVWLP NPPSTLLAKL GERQPKSPPD GTVNLVWWGR | 540 |
| LQQHTKQVRD LIAVAEHLRG LDIDFHLTII GPDTADLTAA ELLDEAARRG VADAVSLPGP | 600 |
| LYGQDLLDAL SEAHLLVSTS VIEGNPLTLV EAQAMGMPIA MYELPWVETT KDNDGVSAVR | 660 |
| QGSVTDLAHE IARISRDPAD YAKLSEASLA AARRARSHDM ADLYARLLSE SLPPEYSPAP | 720 |
| SLADASLLLD WMTFYSERNV GIQARVKGRL RARLAAELEA TRRSFTFRVG RVVAFLPRHL | 780 |
| ARAVLRGLAA TSVGALQRAA QRTGSAPQAD AAPAGPTEGR SPARPDGLPG SSGRARPTSV | 840 |
| QEGELNAEQR RDVVEQVRAE VLGRPAGG | 868 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.87 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MHSEGADSRF KQETPVSSTP DVSIVIPLHD DEEWVASALE SCTRQTLRNI EIICVDDAST | 60 |
| DGTAAVVDAH RRKDPRIRLL KQDANLSAFQ ARRRGVEAAA APYVLFLDGD DELAPDAARV | 120 |
| ALRRARAEAA DIVGFGVEVV KPDGSTGGEF EASLQPRHRT LTGAGIVPGI FPQGKVAQGQ | 180 |
| LWRNLYRREL LLEAYSGLPD DLILFRANDI PIAFLAFARA RRYASTTKHL YRYFFRRGRS | 240 |
| GHQVVDLDAF RFYLGAVDSI ECIEESIREL GERLEDPADL FASYESARLS IIGSVLGYCI | 300 |
| RNVSKKLQPD CVSLLGERVG DVDMIRAAAS FRPDARALLS SRAEAPEAPR NVQRVLIATH | 360 |
| DMKTGGVQGV VAAQSRYLVE NGLSVTVAVH KSDDAVHDLP PEVRLIVIDG TTLAGKLRSW | 420 |
| LEICKKHDVV IDHNVLYNEN WPFYALIART IGVPTIGWLH NFALRTVYDF GTRGSFLRAH | 480 |
| LPLLWTVVVL STEDVSFWKL QGIERVVWLP NPPSTLLAKL GERQPKSPPD GTVNLVWWGR | 540 |
| LQQHTKQVRD LIAVAEHLRG LDIDFHLTII GPDTADLTAA ELLDEAARRG VADAVSLPGP | 600 |
| LYGQDLLDAL SEAHLLVSTS VIEGNPLTLV EAQAMGMPIA MYELPWVETT KDNDGVSAVR | 660 |
| QGSVTDLAHE IARISRDPAD YAKLSEASLA AARRARSHDM ADLYARLLSE SLPPEYSPAP | 720 |
| SLADASLLLD WMTFYSERNV GIQARVKGRL RARLAAELEA TRRSFTFRVG RVVAFLPRHL | 780 |
| ARAVLRGLAA TSVGALQRAA QRTGSAPQAD AAPAGPTEGR SPARPDGLPG SSGRARPTSV | 840 |
| QEGELNAEQR RDVVEQVRAE VLGRPAGG | 868 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.