CAZyme3D

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Entry ID

Information for CAZyme ID: SDS27703.1

Basic Information

GenBank IDSDS27703.1
FamilyGT101
Sequence Length733
UniProt IDA0A1H1QWG3(100,100)Download
Average pLDDT?83.23
CAZy50 ID34708
CAZy50 RepYes, SDS27703.1
Structure ClusterSC_GT101_clus25
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID545619
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyCellulomonadaceae
GenusParaoerskovia
SpeciesParaoerskovia marina

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLVEQEISD  FTHELQRNIV  RQLGHHSVNV  DRDGWLTARI  KPGHSVQMKF  AALGDQVGLL60
VRGSSPEASR  AVRNALVGKA  RDAGDIASNA  HLIDDFDTGT  LRARRSRSEA  IRKSMRWFLW120
ISDATTRTPV  DAKRGPALKG  SERAVYWWDE  RPNFGDAVGP  WLVQAMSGHE  PVNARRRKEL180
SPVLWAVGST  IGYLDRNNVD  IWGSGLMEPL  QGSKLDALRK  LENVRVHAVR  GTETRSELVS240
KLGWEVPEVY  GDPALLLPRF  YTAKPAAQSG  RIAVVPHYVH  VKHLPSSLGD  GSVVVDVASD300
LESVVDTIAQ  ADVCISTSLH  GIIIAQAYGV  PWIWLRVVDH  PLGGDAFKFR  DFFSTIDDSQ360
ASTVAVKASE  LGTLDIESLA  SRATLPSLTI  ALDSLESAFP  FARGEGFEAE  SDLPPLPTPL420
AQLSRRARRR  ASHVKSRLVP  KREADLLQPE  LIKALSTVAS  ELKQSNRNTQ  RLLAEVGKQN480
RTMEAIRLES  TSGVMTAVRE  FVNERQLTMI  ETLEHLVESE  NSFSRFGDGE  FRLMLRSDFN540
LRFQSNSRPL  QSELLATFRD  AGRDRFDVGF  PQIFGDAHWS  GVWSELWPEL  KSNVPETGAF600
LNSHVTRPTV  FEQYGDRAVD  LWREVWRDRD  IVFVTGAGSR  FAATPALFSS  ARSTRTVSSL660
PVGAYDDLDR  LVEELSEVGE  GALVLLALGP  AGTVLARRLA  LIGIRALDIG  HISDSYHNVF720
SGGPRPESRP  IRS733

Predicted 3D structure by AlphaFold2 with pLDDT = 83.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPLVEQEISD  FTHELQRNIV  RQLGHHSVNV  DRDGWLTARI  KPGHSVQMKF  AALGDQVGLL60
VRGSSPEASR  AVRNALVGKA  RDAGDIASNA  HLIDDFDTGT  LRARRSRSEA  IRKSMRWFLW120
ISDATTRTPV  DAKRGPALKG  SERAVYWWDE  RPNFGDAVGP  WLVQAMSGHE  PVNARRRKEL180
SPVLWAVGST  IGYLDRNNVD  IWGSGLMEPL  QGSKLDALRK  LENVRVHAVR  GTETRSELVS240
KLGWEVPEVY  GDPALLLPRF  YTAKPAAQSG  RIAVVPHYVH  VKHLPSSLGD  GSVVVDVASD300
LESVVDTIAQ  ADVCISTSLH  GIIIAQAYGV  PWIWLRVVDH  PLGGDAFKFR  DFFSTIDDSQ360
ASTVAVKASE  LGTLDIESLA  SRATLPSLTI  ALDSLESAFP  FARGEGFEAE  SDLPPLPTPL420
AQLSRRARRR  ASHVKSRLVP  KREADLLQPE  LIKALSTVAS  ELKQSNRNTQ  RLLAEVGKQN480
RTMEAIRLES  TSGVMTAVRE  FVNERQLTMI  ETLEHLVESE  NSFSRFGDGE  FRLMLRSDFN540
LRFQSNSRPL  QSELLATFRD  AGRDRFDVGF  PQIFGDAHWS  GVWSELWPEL  KSNVPETGAF600
LNSHVTRPTV  FEQYGDRAVD  LWREVWRDRD  IVFVTGAGSR  FAATPALFSS  ARSTRTVSSL660
PVGAYDDLDR  LVEELSEVGE  GALVLLALGP  AGTVLARRLA  LIGIRALDIG  HISDSYHNVF720
SGGPRPESRP  IRS733

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT101(524-718)

MPLVEQEISD  FTHELQRNIV  RQLGHHSVNV  DRDGWLTARI  KPGHSVQMKF  AALGDQVGLL60
VRGSSPEASR  AVRNALVGKA  RDAGDIASNA  HLIDDFDTGT  LRARRSRSEA  IRKSMRWFLW120
ISDATTRTPV  DAKRGPALKG  SERAVYWWDE  RPNFGDAVGP  WLVQAMSGHE  PVNARRRKEL180
SPVLWAVGST  IGYLDRNNVD  IWGSGLMEPL  QGSKLDALRK  LENVRVHAVR  GTETRSELVS240
KLGWEVPEVY  GDPALLLPRF  YTAKPAAQSG  RIAVVPHYVH  VKHLPSSLGD  GSVVVDVASD300
LESVVDTIAQ  ADVCISTSLH  GIIIAQAYGV  PWIWLRVVDH  PLGGDAFKFR  DFFSTIDDSQ360
ASTVAVKASE  LGTLDIESLA  SRATLPSLTI  ALDSLESAFP  FARGEGFEAE  SDLPPLPTPL420
AQLSRRARRR  ASHVKSRLVP  KREADLLQPE  LIKALSTVAS  ELKQSNRNTQ  RLLAEVGKQN480
RTMEAIRLES  TSGVMTAVRE  FVNERQLTMI  ETLEHLVESE  NSFSRFGDGE  FRLMLRSDFN540
LRFQSNSRPL  QSELLATFRD  AGRDRFDVGF  PQIFGDAHWS  GVWSELWPEL  KSNVPETGAF600
LNSHVTRPTV  FEQYGDRAVD  LWREVWRDRD  IVFVTGAGSR  FAATPALFSS  ARSTRTVSSL660
PVGAYDDLDR  LVEELSEVGE  GALVLLALGP  AGTVLARRLA  LIGIRALDIG  HISDSYHNVF720
SGGPRPESRP  IRS733

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help