Information for CAZyme ID: SDS20732.1
Basic Information
| GenBank ID | SDS20732.1 |
| Family | GH87 |
| Sequence Length | 603 |
| UniProt ID | A0A1H1QB60(100,100) |
| Average pLDDT? | 91.55 |
| CAZy50 ID | 51939 |
| CAZy50 Rep | Yes, SDS20732.1 |
| Structure Cluster | SC_GH87_clus4 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1882749 |
| Kingdom | Bacteria |
| Phylum | Verrucomicrobiota |
| Class | Opitutae |
| Order | Opitutales |
| Family | Opitutaceae |
| Genus | Opitutus |
| Species | Opitutus sp. GAS368 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MNSSPGKVRR AKTAAAIPLL PRLAFVVACA AGPGQAHAGV GADLPWTTYE AEAMKSTGVV | 60 |
| LGPKYDPYLV ETESSGQKCV KLGATGEFVE FSAAAKANAL VIRYSLPDAK EGGGTDSSLE | 120 |
| LFINGKKART LPLTSRYSWL YGKYPFSNQP GEGKPRNFYN ELRVKDLQIA KDDVIRLQRA | 180 |
| AADTAYCIVD FVDLEDVPAA RTAPANALCV LDFGAGGKGG TDDTDALRRC IAEAQKQGRP | 240 |
| VWVPAGDYKL TGDILVPSAV TIQGAGMWHT TFVGDEKLYG QSARRVRFKL TGRGIHLADF | 300 |
| SIAGKLNYRN DNEPNDGVVG AGCADSTISR VWLEHTKTGI WIYNGTNLVI DGCRFRDLLA | 360 |
| DGVNLCVGTS GTVIQNCTAR GTGDDCFAMW PAASDQGFVG QGPRSGHNVV RHCTGQLPFL | 420 |
| ANGGAIYGGE DNRIEDCLFT DISAGCGILI STTFPTSDEQ RKIDNNFSGT TLVRNCELLR | 480 |
| CGGYDHDWAW RGSFQVCLDR RSISGLTISR VTIRDSISSG LTIVAPGSKK GEGTLSQARL | 540 |
| EQVNITGTGL GGSPHHDLWI RQDAVGGATL VNSQIADIRN ESVNFSLLGE TGEPVPGQAA | 600 |
| SGP | 603 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.55 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MNSSPGKVRR AKTAAAIPLL PRLAFVVACA AGPGQAHAGV GADLPWTTYE AEAMKSTGVV | 60 |
| LGPKYDPYLV ETESSGQKCV KLGATGEFVE FSAAAKANAL VIRYSLPDAK EGGGTDSSLE | 120 |
| LFINGKKART LPLTSRYSWL YGKYPFSNQP GEGKPRNFYN ELRVKDLQIA KDDVIRLQRA | 180 |
| AADTAYCIVD FVDLEDVPAA RTAPANALCV LDFGAGGKGG TDDTDALRRC IAEAQKQGRP | 240 |
| VWVPAGDYKL TGDILVPSAV TIQGAGMWHT TFVGDEKLYG QSARRVRFKL TGRGIHLADF | 300 |
| SIAGKLNYRN DNEPNDGVVG AGCADSTISR VWLEHTKTGI WIYNGTNLVI DGCRFRDLLA | 360 |
| DGVNLCVGTS GTVIQNCTAR GTGDDCFAMW PAASDQGFVG QGPRSGHNVV RHCTGQLPFL | 420 |
| ANGGAIYGGE DNRIEDCLFT DISAGCGILI STTFPTSDEQ RKIDNNFSGT TLVRNCELLR | 480 |
| CGGYDHDWAW RGSFQVCLDR RSISGLTISR VTIRDSISSG LTIVAPGSKK GEGTLSQARL | 540 |
| EQVNITGTGL GGSPHHDLWI RQDAVGGATL VNSQIADIRN ESVNFSLLGE TGEPVPGQAA | 600 |
| SGP | 603 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.