CAZyme3D

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Entry ID

Information for CAZyme ID: SDS20123.1

Basic Information

GenBank IDSDS20123.1
FamilyCBM38, GH116
Sequence Length1249
UniProt IDA0A1H1Q9Y9(100,100)Download
Average pLDDT?88.06
CAZy50 ID6956
CAZy50 RepYes, SDS20123.1
Structure ClusterSC_CBM38_clus1, SC_GH116_clus11
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID630515
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusMicrolunatus
SpeciesMicrolunatus soli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEQRRSQLTI  AEVTGSDSGS  VTCCSSDPTC  CSPASEAGPQ  DTAAPTIGRR  GFLGLSAVAA60
AGAGLLLPAD  AVAVSPDKGI  DPDQLRALRR  GGEPTRYRGE  ALTRIGMPVG  GATCGQVYLS120
GDGRLWLWDV  LHPDAPDYGG  TDWTGVHYTD  PIDLDAPFRT  GFAIRITDAD  GGRSVPLDGI180
GFDQTSFVGR  YPVGEIALRS  STLPISVDLQ  SFSPFIPGDL  DSSSLPVTIM  EYTLHNDSGR240
PVHCRIAGLA  ENPVCLRSRT  SQPVTLAADT  MHSGGVDGVQ  FTATPEPVDD  PLPGDVIFED300
WSGEDFAGWT  VSGTAFGDGP  VDISDLPASM  LRFGPLGSTG  DRLVSSYPAH  SDAATGSLTS360
APFTIEHETI  STRIGGGRRG  VSIAVLIDDH  PVATASGWST  EPLRPVLLDV  SGHRGKTARI420
KISDDNDVAW  GHLTVDRILF  TDRPAPEPDR  VLADWESGNY  DGWTSTGDAF  GAGPVPRSPL480
PDYFPAPDAM  NTEGNFFVSS  HDFRNHDDAG  AADKVTGTLI  GEPFTIDRRY  LAAQIGGGAD540
ANTVGLRLVV  DDTVVARLAG  SNDEAFTPLA  VDVSAYHGST  GHLEIVDDNS  GGWGHVNVDA600
IWLTDLPLRI  IEADQLTDNG  SFAIGVINPG  RELDVRVTPS  AERWQQIDDQ  LDPRPGDTDG660
GRQAGVLTVD  VSLPPHGSRT  VRFAYGWRFP  TPNRRLFGFL  EDFDQLSHHY  AARFDDAAAA720
LDRLATDWDR  LTDTTRTFVR  TWYQDSTLPQ  WLLERTLAPA  STVATETAQR  FSNGRFYAWE780
GTYCCAGTCT  HVWNYAQSIG  YLFGELERDA  RSRTDFGSAF  HPDGSIDYRG  EADRRVAHDG840
QCGNILRTYR  EHQLTSDNDF  LTPIWPRVKK  AMQYLIAFDR  SATEGTEGIL  EGAQYNTLDA900
TWYGEIPWIS  GLYVAALRAC  AEMADDMADA  DFADGCRRLA  DSGSAYLHDH  LWNDRYRYFE960
QRVDPDHADA  INSNRGCYLD  QMFGQTYAHQ  LGLPRVFERS  RSLTALKSLY  RNNFMSDPPS1020
YAETSGIPGG  RAFAEQRDSG  TLVCTWPYGG  ADTAPGSGEP  YAIGYFNEVW  TGMEYQFASH1080
LLSEGMVDEG  LIVLHAIHER  YRAEYRNPYN  EIECSDHYAR  AMMAHSAYLA  AIGFGYHGSR1140
GELSFDPKIN  PDDFRAAFTV  ADGWGTFSQR  DNNDYRASIT  IRHGRLIGLR  RLTLRPAAIE1200
GGRRAQVRDA  EGRPVRSTSR  TTDDSRLQIS  LARPVTLQAG  ETLKINYRS1249

Predicted 3D structure by AlphaFold2 with pLDDT = 88.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEQRRSQLTI  AEVTGSDSGS  VTCCSSDPTC  CSPASEAGPQ  DTAAPTIGRR  GFLGLSAVAA60
AGAGLLLPAD  AVAVSPDKGI  DPDQLRALRR  GGEPTRYRGE  ALTRIGMPVG  GATCGQVYLS120
GDGRLWLWDV  LHPDAPDYGG  TDWTGVHYTD  PIDLDAPFRT  GFAIRITDAD  GGRSVPLDGI180
GFDQTSFVGR  YPVGEIALRS  STLPISVDLQ  SFSPFIPGDL  DSSSLPVTIM  EYTLHNDSGR240
PVHCRIAGLA  ENPVCLRSRT  SQPVTLAADT  MHSGGVDGVQ  FTATPEPVDD  PLPGDVIFED300
WSGEDFAGWT  VSGTAFGDGP  VDISDLPASM  LRFGPLGSTG  DRLVSSYPAH  SDAATGSLTS360
APFTIEHETI  STRIGGGRRG  VSIAVLIDDH  PVATASGWST  EPLRPVLLDV  SGHRGKTARI420
KISDDNDVAW  GHLTVDRILF  TDRPAPEPDR  VLADWESGNY  DGWTSTGDAF  GAGPVPRSPL480
PDYFPAPDAM  NTEGNFFVSS  HDFRNHDDAG  AADKVTGTLI  GEPFTIDRRY  LAAQIGGGAD540
ANTVGLRLVV  DDTVVARLAG  SNDEAFTPLA  VDVSAYHGST  GHLEIVDDNS  GGWGHVNVDA600
IWLTDLPLRI  IEADQLTDNG  SFAIGVINPG  RELDVRVTPS  AERWQQIDDQ  LDPRPGDTDG660
GRQAGVLTVD  VSLPPHGSRT  VRFAYGWRFP  TPNRRLFGFL  EDFDQLSHHY  AARFDDAAAA720
LDRLATDWDR  LTDTTRTFVR  TWYQDSTLPQ  WLLERTLAPA  STVATETAQR  FSNGRFYAWE780
GTYCCAGTCT  HVWNYAQSIG  YLFGELERDA  RSRTDFGSAF  HPDGSIDYRG  EADRRVAHDG840
QCGNILRTYR  EHQLTSDNDF  LTPIWPRVKK  AMQYLIAFDR  SATEGTEGIL  EGAQYNTLDA900
TWYGEIPWIS  GLYVAALRAC  AEMADDMADA  DFADGCRRLA  DSGSAYLHDH  LWNDRYRYFE960
QRVDPDHADA  INSNRGCYLD  QMFGQTYAHQ  LGLPRVFERS  RSLTALKSLY  RNNFMSDPPS1020
YAETSGIPGG  RAFAEQRDSG  TLVCTWPYGG  ADTAPGSGEP  YAIGYFNEVW  TGMEYQFASH1080
LLSEGMVDEG  LIVLHAIHER  YRAEYRNPYN  EIECSDHYAR  AMMAHSAYLA  AIGFGYHGSR1140
GELSFDPKIN  PDDFRAAFTV  ADGWGTFSQR  DNNDYRASIT  IRHGRLIGLR  RLTLRPAAIE1200
GGRRAQVRDA  EGRPVRSTSR  TTDDSRLQIS  LARPVTLQAG  ETLKINYRS1249

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM38(302-425)+CBM38(454-588)+GH116(822-1125)

MEQRRSQLTI  AEVTGSDSGS  VTCCSSDPTC  CSPASEAGPQ  DTAAPTIGRR  GFLGLSAVAA60
AGAGLLLPAD  AVAVSPDKGI  DPDQLRALRR  GGEPTRYRGE  ALTRIGMPVG  GATCGQVYLS120
GDGRLWLWDV  LHPDAPDYGG  TDWTGVHYTD  PIDLDAPFRT  GFAIRITDAD  GGRSVPLDGI180
GFDQTSFVGR  YPVGEIALRS  STLPISVDLQ  SFSPFIPGDL  DSSSLPVTIM  EYTLHNDSGR240
PVHCRIAGLA  ENPVCLRSRT  SQPVTLAADT  MHSGGVDGVQ  FTATPEPVDD  PLPGDVIFED300
WSGEDFAGWT  VSGTAFGDGP  VDISDLPASM  LRFGPLGSTG  DRLVSSYPAH  SDAATGSLTS360
APFTIEHETI  STRIGGGRRG  VSIAVLIDDH  PVATASGWST  EPLRPVLLDV  SGHRGKTARI420
KISDDNDVAW  GHLTVDRILF  TDRPAPEPDR  VLADWESGNY  DGWTSTGDAF  GAGPVPRSPL480
PDYFPAPDAM  NTEGNFFVSS  HDFRNHDDAG  AADKVTGTLI  GEPFTIDRRY  LAAQIGGGAD540
ANTVGLRLVV  DDTVVARLAG  SNDEAFTPLA  VDVSAYHGST  GHLEIVDDNS  GGWGHVNVDA600
IWLTDLPLRI  IEADQLTDNG  SFAIGVINPG  RELDVRVTPS  AERWQQIDDQ  LDPRPGDTDG660
GRQAGVLTVD  VSLPPHGSRT  VRFAYGWRFP  TPNRRLFGFL  EDFDQLSHHY  AARFDDAAAA720
LDRLATDWDR  LTDTTRTFVR  TWYQDSTLPQ  WLLERTLAPA  STVATETAQR  FSNGRFYAWE780
GTYCCAGTCT  HVWNYAQSIG  YLFGELERDA  RSRTDFGSAF  HPDGSIDYRG  EADRRVAHDG840
QCGNILRTYR  EHQLTSDNDF  LTPIWPRVKK  AMQYLIAFDR  SATEGTEGIL  EGAQYNTLDA900
TWYGEIPWIS  GLYVAALRAC  AEMADDMADA  DFADGCRRLA  DSGSAYLHDH  LWNDRYRYFE960
QRVDPDHADA  INSNRGCYLD  QMFGQTYAHQ  LGLPRVFERS  RSLTALKSLY  RNNFMSDPPS1020
YAETSGIPGG  RAFAEQRDSG  TLVCTWPYGG  ADTAPGSGEP  YAIGYFNEVW  TGMEYQFASH1080
LLSEGMVDEG  LIVLHAIHER  YRAEYRNPYN  EIECSDHYAR  AMMAHSAYLA  AIGFGYHGSR1140
GELSFDPKIN  PDDFRAAFTV  ADGWGTFSQR  DNNDYRASIT  IRHGRLIGLR  RLTLRPAAIE1200
GGRRAQVRDA  EGRPVRSTSR  TTDDSRLQIS  LARPVTLQAG  ETLKINYRS1249

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help