CAZyme3D

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Entry ID

Information for CAZyme ID: SCG60771.1

Basic Information

GenBank IDSCG60771.1
FamilyCBM20
Sequence Length594
UniProt IDA0A1C5IS02(100,100)Download
Average pLDDT?73.57
CAZy50 ID53258
CAZy50 RepYes, SCG60771.1
Structure ClusterSC_CBM20_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID299152
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora siamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSVRTPMHLA  VALATATALL  PAASAAAAEP  DPPQRAAQPA  ALPESPAPTS  TFLVGVRPAA60
PDRRTAAAPA  RLADDLAAVG  RATGRTLTVA  RVLATGDLLV  RADRPLAADR  ATTVLDQLRR120
RADVDWASAD  RRIQAGTDGA  AEQWDLDDPV  GGVYLGPARE  SGATGAGVTV  AVLDTGITAH180
PELAANVVPG  YDFVSSAADA  RDGDGRDADP  TDQGDWQEPG  DCGEEFRPSS  WHGTHVAGTI240
AARDDRAGTV  GVAPDARIQP  VRVLGRCGGT  TADLVDAIVW  ASGGNVPGVP  DNPTPARVLN300
LSLGAPGGCD  PATQAAVDGA  VARGVTVVVS  AGNASADAAG  FSPAGCAGVV  TVAASDDAGE360
RAGYSNRGTA  VELAAPGGDR  TRGVLSTVNT  GRTVAEDAGY  AAYAGTSMAA  PHVAGAAALL420
LAIRPDLSPD  RITELLRRTA  RPAVRPDDCA  CGAGVLDVDL  ALRAATGHPG  DTARVLVTAG480
VRPGEPLVDA  AGVHLAGTLG  RLGTGLPDWD  PAALRLRRVG  PTGPYRTVLT  VPAGAELEYK540
YTLGGWDHVE  QDYTDSDAGC  FDVDNRHLTV  APAGAVQTVD  DLTGSFRGLW  PCDR594

Predicted 3D structure by AlphaFold2 with pLDDT = 73.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSVRTPMHLA  VALATATALL  PAASAAAAEP  DPPQRAAQPA  ALPESPAPTS  TFLVGVRPAA60
PDRRTAAAPA  RLADDLAAVG  RATGRTLTVA  RVLATGDLLV  RADRPLAADR  ATTVLDQLRR120
RADVDWASAD  RRIQAGTDGA  AEQWDLDDPV  GGVYLGPARE  SGATGAGVTV  AVLDTGITAH180
PELAANVVPG  YDFVSSAADA  RDGDGRDADP  TDQGDWQEPG  DCGEEFRPSS  WHGTHVAGTI240
AARDDRAGTV  GVAPDARIQP  VRVLGRCGGT  TADLVDAIVW  ASGGNVPGVP  DNPTPARVLN300
LSLGAPGGCD  PATQAAVDGA  VARGVTVVVS  AGNASADAAG  FSPAGCAGVV  TVAASDDAGE360
RAGYSNRGTA  VELAAPGGDR  TRGVLSTVNT  GRTVAEDAGY  AAYAGTSMAA  PHVAGAAALL420
LAIRPDLSPD  RITELLRRTA  RPAVRPDDCA  CGAGVLDVDL  ALRAATGHPG  DTARVLVTAG480
VRPGEPLVDA  AGVHLAGTLG  RLGTGLPDWD  PAALRLRRVG  PTGPYRTVLT  VPAGAELEYK540
YTLGGWDHVE  QDYTDSDAGC  FDVDNRHLTV  APAGAVQTVD  DLTGSFRGLW  PCDR594

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(506-571)

MSVRTPMHLA  VALATATALL  PAASAAAAEP  DPPQRAAQPA  ALPESPAPTS  TFLVGVRPAA60
PDRRTAAAPA  RLADDLAAVG  RATGRTLTVA  RVLATGDLLV  RADRPLAADR  ATTVLDQLRR120
RADVDWASAD  RRIQAGTDGA  AEQWDLDDPV  GGVYLGPARE  SGATGAGVTV  AVLDTGITAH180
PELAANVVPG  YDFVSSAADA  RDGDGRDADP  TDQGDWQEPG  DCGEEFRPSS  WHGTHVAGTI240
AARDDRAGTV  GVAPDARIQP  VRVLGRCGGT  TADLVDAIVW  ASGGNVPGVP  DNPTPARVLN300
LSLGAPGGCD  PATQAAVDGA  VARGVTVVVS  AGNASADAAG  FSPAGCAGVV  TVAASDDAGE360
RAGYSNRGTA  VELAAPGGDR  TRGVLSTVNT  GRTVAEDAGY  AAYAGTSMAA  PHVAGAAALL420
LAIRPDLSPD  RITELLRRTA  RPAVRPDDCA  CGAGVLDVDL  ALRAATGHPG  DTARVLVTAG480
VRPGEPLVDA  AGVHLAGTLG  RLGTGLPDWD  PAALRLRRVG  PTGPYRTVLT  VPAGAELEYK540
YTLGGWDHVE  QDYTDSDAGC  FDVDNRHLTV  APAGAVQTVD  DLTGSFRGLW  PCDR594

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help