Information for CAZyme ID: SCD21939.1
Basic Information
| GenBank ID | SCD21939.1 |
| Family | PL40 |
| Sequence Length | 877 |
| UniProt ID | A0A1R3T767(100,100) |
| Average pLDDT? | 92.53 |
| CAZy50 ID | 20916 |
| CAZy50 Rep | Yes, SCD21939.1 |
| Structure Cluster | SC_PL40_clus3 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1642647 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Dysgonomonadaceae |
| Genus | Proteiniphilum |
| Species | Proteiniphilum saccharofermentans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSRVVVFLFT LCAGIFYSTG QNQHEHPRLL VKDTGKKYIL DKIEQHEWAK SIFNEHYDKV | 60 |
| SPYVERHQSD PEWILGRYLM NRVEGKRYTH AYDDGTGHYI VRYSGDAPVP TVRVSTHKRN | 120 |
| PVTESGAPYV MPSLEELVPN DTSMYIWALN TETNKKDFID PQQFVSIING EINDLALSAA | 180 |
| VIYWLKEDES YARFAADILD QWAQGVFYQE PIIGACRTGL LDIQTLGDNR YQSLILAYDF | 240 |
| LYPFLKKEGY ELSRYQHVFE KFASTLTFRG FWNNNWYAAV SATLVYAVLS LDDKEKQDYY | 300 |
| LQFVLERDTI DGSCGRLSLA TTVKEWLTPD GHWKEPGGYH NFPVSNLIKA AFTLEKNGYP | 360 |
| VFQQYPELFD ATYAMLKYSF PNLYVSAFGD TGRAFQSPET LEIGLVIATE YNRPEVPGMM | 420 |
| AAMNTITGHG MYDRSKSGLM GLLTYLPDFP EGVSQPYVWA RSGELDFARF YFQRNGTDEK | 480 |
| QGLMYGVQGA SYNHNHCNGM AMELYGCGEV MGIDAGTGPN YEHPLHQGYF SQWAAHNTVV | 540 |
| AAGRSSSIPF SGAAGKKNIG QVELAAMEPL PGKNGVSPYH SFTDTRYLDI STHTNQLRTM | 600 |
| GIIRTSDSTG YYIDIFRSDN QISNDYVYHN IGDSFVFSGQ SGNPLQMESA KYPLVEEDYP | 660 |
| GFRFFTDVEK MENVRENVRG LFSAKDRQGQ DIFMHVFLPA SDKVYYRAKS PAVRTGGRQY | 720 |
| FNRPLPLFTV RSEEEAWTEP FICIFEPSVS KENNTIVSVE RIAELCDSEN TVIRVWHKDG | 780 |
| SAQIIFQGNC AKRIIKGDHF SFSGSFGVIS TDVNGNLESL YLGEGHHIAY SDVKVKSIDA | 840 |
| PASVFIRLDD KNEYSVSGNQ PVKIDLSGTI INYLLTD | 877 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.53 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MSRVVVFLFT LCAGIFYSTG QNQHEHPRLL VKDTGKKYIL DKIEQHEWAK SIFNEHYDKV | 60 |
| SPYVERHQSD PEWILGRYLM NRVEGKRYTH AYDDGTGHYI VRYSGDAPVP TVRVSTHKRN | 120 |
| PVTESGAPYV MPSLEELVPN DTSMYIWALN TETNKKDFID PQQFVSIING EINDLALSAA | 180 |
| VIYWLKEDES YARFAADILD QWAQGVFYQE PIIGACRTGL LDIQTLGDNR YQSLILAYDF | 240 |
| LYPFLKKEGY ELSRYQHVFE KFASTLTFRG FWNNNWYAAV SATLVYAVLS LDDKEKQDYY | 300 |
| LQFVLERDTI DGSCGRLSLA TTVKEWLTPD GHWKEPGGYH NFPVSNLIKA AFTLEKNGYP | 360 |
| VFQQYPELFD ATYAMLKYSF PNLYVSAFGD TGRAFQSPET LEIGLVIATE YNRPEVPGMM | 420 |
| AAMNTITGHG MYDRSKSGLM GLLTYLPDFP EGVSQPYVWA RSGELDFARF YFQRNGTDEK | 480 |
| QGLMYGVQGA SYNHNHCNGM AMELYGCGEV MGIDAGTGPN YEHPLHQGYF SQWAAHNTVV | 540 |
| AAGRSSSIPF SGAAGKKNIG QVELAAMEPL PGKNGVSPYH SFTDTRYLDI STHTNQLRTM | 600 |
| GIIRTSDSTG YYIDIFRSDN QISNDYVYHN IGDSFVFSGQ SGNPLQMESA KYPLVEEDYP | 660 |
| GFRFFTDVEK MENVRENVRG LFSAKDRQGQ DIFMHVFLPA SDKVYYRAKS PAVRTGGRQY | 720 |
| FNRPLPLFTV RSEEEAWTEP FICIFEPSVS KENNTIVSVE RIAELCDSEN TVIRVWHKDG | 780 |
| SAQIIFQGNC AKRIIKGDHF SFSGSFGVIS TDVNGNLESL YLGEGHHIAY SDVKVKSIDA | 840 |
| PASVFIRLDD KNEYSVSGNQ PVKIDLSGTI INYLLTD | 877 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.