CAZyme3D

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Entry ID

Information for CAZyme ID: SAM85626.1

Basic Information

GenBank IDSAM85626.1
FamilyGH5_9
Sequence Length907
UniProt IDA0A1K0GC43(100,100)Download
Average pLDDT?72.11
CAZy50 ID18934
CAZy50 RepYes, SAM85626.1
Structure ClusterSC_GH5_clus2
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID307758
KingdomEukaryota
PhylumBasidiomycota
ClassUstilaginomycetes
OrderUstilaginales
FamilyUstilaginaceae
GenusUstilago
SpeciesUstilago bromivora

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVGRRPSTPS  RARLPESYEL  PASPRQPAIQ  EPLLNADNSF  ATADPDCTSG  SLPPLPSQAP60
RWSRSNSRYS  NLDPSLDSNL  DPTISSSAPA  YNYDHSYNYD  HSYNHYRSSS  PTAPQAIQER120
PFTPPFARSA  SRPTSLASSH  MLSVRSQSDY  DSVYQLWRQS  GTPSSFRDLA  GDDAASGYYD180
TTRPSSAVDL  EKIEQYRSGA  YAPNSPPLAQ  QPLHKGEAGT  KGSKDYRAVG  LAKYGRGKDQ240
QMSTKNKWLI  VLAVAAVIAV  LTIAIVLPIT  QVLLKSDSRS  AKAGQGSGSS  SGESDQGSNS300
ASGKQFQLWG  TNGSTIDLGN  GRSFTYINNF  GGRWASQPFN  NSAQAQNYTP  PLYQEFDFAR360
NRMLGVNLGG  WLVTEPFIVP  ALYELYENTS  SPAVDEFTLS  QKFLQEGGQD  SLRAKMTEHY420
DTFITEEDFA  RIAGAGLNWV  RLPIGFWALE  TYANEPFLEG  VAWNYVLKAI  QWARKYGLRI480
NLDLHAVPGS  QNAYNHSGRV  GFINFLQGLM  GKVNGERTIN  YIRQITQFIS  QPEIRPVVPM540
FSVINEPYAI  SIGQPALQSW  YSQIYTTIRN  ITGTGAGKGP  YITIHDGFLP  LSNWQAFLSG600
GDRMAWDTHP  YICFGQQNND  PWDTQIMKVC  NQFTPLLDNA  RSNMGVSMGG  EMSLAINDCG660
LFLNGVGDGS  RYDGTYSGPT  PGNFPRVGSC  QPFDDYENYS  AEMKQGLRRF  ALTSMDSLQD720
FFFWTWRIGN  SLRTGKPTAP  MWSYSLGLEQ  GWMPTNPLGE  SHGACQAQAS  RIGTSVATAT780
WGRAFQSWQT  GRAGSYNPDT  GAKPWPPQSI  VSANRAVNQL  PSYTATKPIT  PLATPTLTRT840
ATLAGEPTAQ  PTLGGWFNGD  QNSPFYTAIG  GCSYPEDQYN  LGAFDANGWP  CSGGGVKQRR900
AEPTALP907

Predicted 3D structure by AlphaFold2 with pLDDT = 72.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVGRRPSTPS  RARLPESYEL  PASPRQPAIQ  EPLLNADNSF  ATADPDCTSG  SLPPLPSQAP60
RWSRSNSRYS  NLDPSLDSNL  DPTISSSAPA  YNYDHSYNYD  HSYNHYRSSS  PTAPQAIQER120
PFTPPFARSA  SRPTSLASSH  MLSVRSQSDY  DSVYQLWRQS  GTPSSFRDLA  GDDAASGYYD180
TTRPSSAVDL  EKIEQYRSGA  YAPNSPPLAQ  QPLHKGEAGT  KGSKDYRAVG  LAKYGRGKDQ240
QMSTKNKWLI  VLAVAAVIAV  LTIAIVLPIT  QVLLKSDSRS  AKAGQGSGSS  SGESDQGSNS300
ASGKQFQLWG  TNGSTIDLGN  GRSFTYINNF  GGRWASQPFN  NSAQAQNYTP  PLYQEFDFAR360
NRMLGVNLGG  WLVTEPFIVP  ALYELYENTS  SPAVDEFTLS  QKFLQEGGQD  SLRAKMTEHY420
DTFITEEDFA  RIAGAGLNWV  RLPIGFWALE  TYANEPFLEG  VAWNYVLKAI  QWARKYGLRI480
NLDLHAVPGS  QNAYNHSGRV  GFINFLQGLM  GKVNGERTIN  YIRQITQFIS  QPEIRPVVPM540
FSVINEPYAI  SIGQPALQSW  YSQIYTTIRN  ITGTGAGKGP  YITIHDGFLP  LSNWQAFLSG600
GDRMAWDTHP  YICFGQQNND  PWDTQIMKVC  NQFTPLLDNA  RSNMGVSMGG  EMSLAINDCG660
LFLNGVGDGS  RYDGTYSGPT  PGNFPRVGSC  QPFDDYENYS  AEMKQGLRRF  ALTSMDSLQD720
FFFWTWRIGN  SLRTGKPTAP  MWSYSLGLEQ  GWMPTNPLGE  SHGACQAQAS  RIGTSVATAT780
WGRAFQSWQT  GRAGSYNPDT  GAKPWPPQSI  VSANRAVNQL  PSYTATKPIT  PLATPTLTRT840
ATLAGEPTAQ  PTLGGWFNGD  QNSPFYTAIG  GCSYPEDQYN  LGAFDANGWP  CSGGGVKQRR900
AEPTALP907

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_9(418-728)

MVGRRPSTPS  RARLPESYEL  PASPRQPAIQ  EPLLNADNSF  ATADPDCTSG  SLPPLPSQAP60
RWSRSNSRYS  NLDPSLDSNL  DPTISSSAPA  YNYDHSYNYD  HSYNHYRSSS  PTAPQAIQER120
PFTPPFARSA  SRPTSLASSH  MLSVRSQSDY  DSVYQLWRQS  GTPSSFRDLA  GDDAASGYYD180
TTRPSSAVDL  EKIEQYRSGA  YAPNSPPLAQ  QPLHKGEAGT  KGSKDYRAVG  LAKYGRGKDQ240
QMSTKNKWLI  VLAVAAVIAV  LTIAIVLPIT  QVLLKSDSRS  AKAGQGSGSS  SGESDQGSNS300
ASGKQFQLWG  TNGSTIDLGN  GRSFTYINNF  GGRWASQPFN  NSAQAQNYTP  PLYQEFDFAR360
NRMLGVNLGG  WLVTEPFIVP  ALYELYENTS  SPAVDEFTLS  QKFLQEGGQD  SLRAKMTEHY420
DTFITEEDFA  RIAGAGLNWV  RLPIGFWALE  TYANEPFLEG  VAWNYVLKAI  QWARKYGLRI480
NLDLHAVPGS  QNAYNHSGRV  GFINFLQGLM  GKVNGERTIN  YIRQITQFIS  QPEIRPVVPM540
FSVINEPYAI  SIGQPALQSW  YSQIYTTIRN  ITGTGAGKGP  YITIHDGFLP  LSNWQAFLSG600
GDRMAWDTHP  YICFGQQNND  PWDTQIMKVC  NQFTPLLDNA  RSNMGVSMGG  EMSLAINDCG660
LFLNGVGDGS  RYDGTYSGPT  PGNFPRVGSC  QPFDDYENYS  AEMKQGLRRF  ALTSMDSLQD720
FFFWTWRIGN  SLRTGKPTAP  MWSYSLGLEQ  GWMPTNPLGE  SHGACQAQAS  RIGTSVATAT780
WGRAFQSWQT  GRAGSYNPDT  GAKPWPPQSI  VSANRAVNQL  PSYTATKPIT  PLATPTLTRT840
ATLAGEPTAQ  PTLGGWFNGD  QNSPFYTAIG  GCSYPEDQYN  LGAFDANGWP  CSGGGVKQRR900
AEPTALP907

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help