CAZyme3D

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Entry ID

Information for CAZyme ID: QZT37474.1

Basic Information

GenBank IDQZT37474.1
FamilyPL8_2
Sequence Length1055
UniProt IDQZT37474.1(MOD)Download
Average pLDDT?91.49
CAZy50 ID12013
CAZy50 RepYes, QZT37474.1
Structure ClusterSC_PL8_clus31
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2053594
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderMarinilabiliales
FamilyProlixibacteraceae
Genus
SpeciesProlixibacteraceae bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSLLLVGNSS  FAAKKLVVQD  KIIAEKITFE  DNSVLSSWRS  LTGEVKLSRS  HQKDGKSSLL60
WSMSSDDALV  VNGLIGLKRA  TSEYSGGQPE  VYEPAYYGKN  KYGGVKFWIY  QEKAKKGEMW120
CYLGDGKKGA  LTNPKYRFSM  NLNFTGWRAV  WVQFEEDAKV  KSYKGNNKVN  TFVFQPNNSI180
SSGKIFFDHF  QLVDFVSYKR  HSDLVFKNNK  KAVRSDTYEI  YSSYQKYLGI  GKKNERNTVV240
NKGDFKNIEN  RLDYLILGDK  ANDWKSHYGS  ISDQLSKRIN  TANDFYSKLK  IKDTPKGIKG300
VPLYSCRDEQ  GELYGHNFQR  VIESTLFPLS  FDYRFNNTKS  SKDKVFTLYK  YLEDQGWAAG360
SAVGTLDHVI  RLNGFAVSAF  LMRNDMSDEQ  RHRIQACLAW  HTRIGNIISM  DYSLGENTDL420
VRGGALPKLI  SILLMDSGAK  KNKLMNDFNG  YLEHIASVAP  GYADTFKPDY  SVYHHRGTYL480
NSYGVQTLNT  VSMLSWLMDD  GSFSLSNSKK  DFLKKVLLRQ  SDIAYGLYLN  MGVCGRFPYK540
NTALDRYLIT  SFAFLSVDDK  RVEDRSLAAR  LNDIYSLSSP  EACYALTFPQ  LTYTGTLGTL600
SLIDIVHKQM  GHVVELPKAQ  NISMPYSSLS  VQRGKDWYFS  VKGYNKYIWD  YETGHKGENN660
LGRYLSFGSV  LALKGAPRDA  MRRAGIEQNK  GFHWAYLPGA  TTKALPIEKV  YYENKPTGKY720
KEGYHRSFAN  TTFAGGLSSN  HKNGLYAMEL  RDDVGPNTDG  VLFDDTFRAR  KSYFYFDDEI780
ICLGSNISNQ  DKQYHTVTTL  FQTNLEDVTP  SKGLPWVNNE  QFPNVLGETK  KYSLSCITDV840
QGIQYVIGKN  SDSLVIRYNK  QSSLLNQKGK  YVPIKTLHVK  AWFDHGVTPK  GGHYQYAMLM900
NHSRKQAMSY  KSNVPYRVIE  QDEVAHIVQH  QIKNTTAFAI  FDSKKFDGHG  LIKSVNHPIL960
AYVVNKKNKV  HLTVANPDLN  IAKWNHNMSF  MPNSIVHANG  RGEIVTILLD  GKWKPEKELD1020
QLVSIKYLGN  NTEIKVLTKN  GQSIDIPLHQ  YQIKW1055

Predicted 3D structure by AlphaFold2 with pLDDT = 91.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSLLLVGNSS  FAAKKLVVQD  KIIAEKITFE  DNSVLSSWRS  LTGEVKLSRS  HQKDGKSSLL60
WSMSSDDALV  VNGLIGLKRA  TSEYSGGQPE  VYEPAYYGKN  KYGGVKFWIY  QEKAKKGEMW120
CYLGDGKKGA  LTNPKYRFSM  NLNFTGWRAV  WVQFEEDAKV  KSYKGNNKVN  TFVFQPNNSI180
SSGKIFFDHF  QLVDFVSYKR  HSDLVFKNNK  KAVRSDTYEI  YSSYQKYLGI  GKKNERNTVV240
NKGDFKNIEN  RLDYLILGDK  ANDWKSHYGS  ISDQLSKRIN  TANDFYSKLK  IKDTPKGIKG300
VPLYSCRDEQ  GELYGHNFQR  VIESTLFPLS  FDYRFNNTKS  SKDKVFTLYK  YLEDQGWAAG360
SAVGTLDHVI  RLNGFAVSAF  LMRNDMSDEQ  RHRIQACLAW  HTRIGNIISM  DYSLGENTDL420
VRGGALPKLI  SILLMDSGAK  KNKLMNDFNG  YLEHIASVAP  GYADTFKPDY  SVYHHRGTYL480
NSYGVQTLNT  VSMLSWLMDD  GSFSLSNSKK  DFLKKVLLRQ  SDIAYGLYLN  MGVCGRFPYK540
NTALDRYLIT  SFAFLSVDDK  RVEDRSLAAR  LNDIYSLSSP  EACYALTFPQ  LTYTGTLGTL600
SLIDIVHKQM  GHVVELPKAQ  NISMPYSSLS  VQRGKDWYFS  VKGYNKYIWD  YETGHKGENN660
LGRYLSFGSV  LALKGAPRDA  MRRAGIEQNK  GFHWAYLPGA  TTKALPIEKV  YYENKPTGKY720
KEGYHRSFAN  TTFAGGLSSN  HKNGLYAMEL  RDDVGPNTDG  VLFDDTFRAR  KSYFYFDDEI780
ICLGSNISNQ  DKQYHTVTTL  FQTNLEDVTP  SKGLPWVNNE  QFPNVLGETK  KYSLSCITDV840
QGIQYVIGKN  SDSLVIRYNK  QSSLLNQKGK  YVPIKTLHVK  AWFDHGVTPK  GGHYQYAMLM900
NHSRKQAMSY  KSNVPYRVIE  QDEVAHIVQH  QIKNTTAFAI  FDSKKFDGHG  LIKSVNHPIL960
AYVVNKKNKV  HLTVANPDLN  IAKWNHNMSF  MPNSIVHANG  RGEIVTILLD  GKWKPEKELD1020
QLVSIKYLGN  NTEIKVLTKN  GQSIDIPLHQ  YQIKW1055

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL8_2(631-899)

MSLLLVGNSS  FAAKKLVVQD  KIIAEKITFE  DNSVLSSWRS  LTGEVKLSRS  HQKDGKSSLL60
WSMSSDDALV  VNGLIGLKRA  TSEYSGGQPE  VYEPAYYGKN  KYGGVKFWIY  QEKAKKGEMW120
CYLGDGKKGA  LTNPKYRFSM  NLNFTGWRAV  WVQFEEDAKV  KSYKGNNKVN  TFVFQPNNSI180
SSGKIFFDHF  QLVDFVSYKR  HSDLVFKNNK  KAVRSDTYEI  YSSYQKYLGI  GKKNERNTVV240
NKGDFKNIEN  RLDYLILGDK  ANDWKSHYGS  ISDQLSKRIN  TANDFYSKLK  IKDTPKGIKG300
VPLYSCRDEQ  GELYGHNFQR  VIESTLFPLS  FDYRFNNTKS  SKDKVFTLYK  YLEDQGWAAG360
SAVGTLDHVI  RLNGFAVSAF  LMRNDMSDEQ  RHRIQACLAW  HTRIGNIISM  DYSLGENTDL420
VRGGALPKLI  SILLMDSGAK  KNKLMNDFNG  YLEHIASVAP  GYADTFKPDY  SVYHHRGTYL480
NSYGVQTLNT  VSMLSWLMDD  GSFSLSNSKK  DFLKKVLLRQ  SDIAYGLYLN  MGVCGRFPYK540
NTALDRYLIT  SFAFLSVDDK  RVEDRSLAAR  LNDIYSLSSP  EACYALTFPQ  LTYTGTLGTL600
SLIDIVHKQM  GHVVELPKAQ  NISMPYSSLS  VQRGKDWYFS  VKGYNKYIWD  YETGHKGENN660
LGRYLSFGSV  LALKGAPRDA  MRRAGIEQNK  GFHWAYLPGA  TTKALPIEKV  YYENKPTGKY720
KEGYHRSFAN  TTFAGGLSSN  HKNGLYAMEL  RDDVGPNTDG  VLFDDTFRAR  KSYFYFDDEI780
ICLGSNISNQ  DKQYHTVTTL  FQTNLEDVTP  SKGLPWVNNE  QFPNVLGETK  KYSLSCITDV840
QGIQYVIGKN  SDSLVIRYNK  QSSLLNQKGK  YVPIKTLHVK  AWFDHGVTPK  GGHYQYAMLM900
NHSRKQAMSY  KSNVPYRVIE  QDEVAHIVQH  QIKNTTAFAI  FDSKKFDGHG  LIKSVNHPIL960
AYVVNKKNKV  HLTVANPDLN  IAKWNHNMSF  MPNSIVHANG  RGEIVTILLD  GKWKPEKELD1020
QLVSIKYLGN  NTEIKVLTKN  GQSIDIPLHQ  YQIKW1055

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help