CAZyme3D

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Entry ID

Information for CAZyme ID: QYT01539.1

Basic Information

GenBank IDQYT01539.1
FamilyGH2
Sequence Length700
UniProt IDA0A8G0PM30(100,100)Download
Average pLDDT?89.81
CAZy50 ID38673
CAZy50 RepYes, QYT01539.1
Structure ClusterSC_GH2_clus132
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1491479
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderHypocreales
FamilyHypocreaceae
GenusTrichoderma
SpeciesTrichoderma simmonsii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQGQPQYHDS  SEYPRPDFQR  TESRWLSLNG  PWDFLFDDDD  VGLSLRWQQS  GLPAQISVKK60
TLEKSETGSQ  SESDTITQRI  AAGTQNLLKD  NLFTRDSSGK  INHKRPIAVP  FVFQCPASGI120
NERGIHEVLW  YERTISDLRD  KTERQEGRRL  LLRFGAVDYE  ASVWVDGNFV  GSHRGGHVPF180
QLDITDVIDA  NASGGHRLTV  RVFDSAYDLT  QPRGKQYWGA  QPESIFYTPS  GGIWQSVWLE240
VVPAARIADS  SFGTVIRSND  IHAGEIQFEI  ATQGLQASRG  YGVEAEVNFG  GQLVSKSPKI300
DVKEGSGRFS  LSARLSKESV  SALPESTLKD  APLSDVSCWR  DGVALWSPEH  PQLYDLTVRL360
FDSFSGREVD  KIKTTTGMRS  IQWSNGDGLW  RLNDAPYFQM  LNLDQGYWPN  SFLTPEFTYS420
LEVDIECAKK  MGFNGCRKHQ  KVEDPRFYYW  ADKKGYLVWA  EMANAYQFSG  EYVDRFNQEW480
TESVKLAINH  PSVVTWTPVN  ESWAYTSLKD  NTEQRNHIRS  LYYLTKTLDP  TRSINDNCGW540
EHVCTDLSTF  HDYSDGPELE  KTCADLGAIL  GPKAGRDLFV  GEIPNVDKGT  HHKPGAPIIC600
SECGGINIAL  AKKDDSEESR  DWGYTTAADP  EDLLKRVERV  VKGVAGGGYC  CGFVYTQLTD660
IEQETNGLYT  FSRQEKLDPT  KVKAVMEEAA  QMFYKRVKSA  700

Predicted 3D structure by AlphaFold2 with pLDDT = 89.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQGQPQYHDS  SEYPRPDFQR  TESRWLSLNG  PWDFLFDDDD  VGLSLRWQQS  GLPAQISVKK60
TLEKSETGSQ  SESDTITQRI  AAGTQNLLKD  NLFTRDSSGK  INHKRPIAVP  FVFQCPASGI120
NERGIHEVLW  YERTISDLRD  KTERQEGRRL  LLRFGAVDYE  ASVWVDGNFV  GSHRGGHVPF180
QLDITDVIDA  NASGGHRLTV  RVFDSAYDLT  QPRGKQYWGA  QPESIFYTPS  GGIWQSVWLE240
VVPAARIADS  SFGTVIRSND  IHAGEIQFEI  ATQGLQASRG  YGVEAEVNFG  GQLVSKSPKI300
DVKEGSGRFS  LSARLSKESV  SALPESTLKD  APLSDVSCWR  DGVALWSPEH  PQLYDLTVRL360
FDSFSGREVD  KIKTTTGMRS  IQWSNGDGLW  RLNDAPYFQM  LNLDQGYWPN  SFLTPEFTYS420
LEVDIECAKK  MGFNGCRKHQ  KVEDPRFYYW  ADKKGYLVWA  EMANAYQFSG  EYVDRFNQEW480
TESVKLAINH  PSVVTWTPVN  ESWAYTSLKD  NTEQRNHIRS  LYYLTKTLDP  TRSINDNCGW540
EHVCTDLSTF  HDYSDGPELE  KTCADLGAIL  GPKAGRDLFV  GEIPNVDKGT  HHKPGAPIIC600
SECGGINIAL  AKKDDSEESR  DWGYTTAADP  EDLLKRVERV  VKGVAGGGYC  CGFVYTQLTD660
IEQETNGLYT  FSRQEKLDPT  KVKAVMEEAA  QMFYKRVKSA  700

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(19-555)

MQGQPQYHDS  SEYPRPDFQR  TESRWLSLNG  PWDFLFDDDD  VGLSLRWQQS  GLPAQISVKK60
TLEKSETGSQ  SESDTITQRI  AAGTQNLLKD  NLFTRDSSGK  INHKRPIAVP  FVFQCPASGI120
NERGIHEVLW  YERTISDLRD  KTERQEGRRL  LLRFGAVDYE  ASVWVDGNFV  GSHRGGHVPF180
QLDITDVIDA  NASGGHRLTV  RVFDSAYDLT  QPRGKQYWGA  QPESIFYTPS  GGIWQSVWLE240
VVPAARIADS  SFGTVIRSND  IHAGEIQFEI  ATQGLQASRG  YGVEAEVNFG  GQLVSKSPKI300
DVKEGSGRFS  LSARLSKESV  SALPESTLKD  APLSDVSCWR  DGVALWSPEH  PQLYDLTVRL360
FDSFSGREVD  KIKTTTGMRS  IQWSNGDGLW  RLNDAPYFQM  LNLDQGYWPN  SFLTPEFTYS420
LEVDIECAKK  MGFNGCRKHQ  KVEDPRFYYW  ADKKGYLVWA  EMANAYQFSG  EYVDRFNQEW480
TESVKLAINH  PSVVTWTPVN  ESWAYTSLKD  NTEQRNHIRS  LYYLTKTLDP  TRSINDNCGW540
EHVCTDLSTF  HDYSDGPELE  KTCADLGAIL  GPKAGRDLFV  GEIPNVDKGT  HHKPGAPIIC600
SECGGINIAL  AKKDDSEESR  DWGYTTAADP  EDLLKRVERV  VKGVAGGGYC  CGFVYTQLTD660
IEQETNGLYT  FSRQEKLDPT  KVKAVMEEAA  QMFYKRVKSA  700

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help