CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QYM77798.1

Basic Information

GenBank IDQYM77798.1
FamilyCE12, CE8
Sequence Length807
UniProt IDA0A8F9XIP1(100,100)Download
Average pLDDT?91.55
CAZy50 ID26587
CAZy50 RepYes, QYM77798.1
Structure ClusterSC_CE12_clus75, SC_CE8_clus68
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2862869
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
GenusHorticoccus
SpeciesHorticoccus luteus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRSWLAVFVA  CCLLPFGARA  TPDAVVATDG  SGQYRSVQEA  ISTAPLRTDP  ATPPWVILVK60
PGTYHERIYV  QRERGHVRIV  GEDAATTTIT  YDLSTGSPGP  DGKPIGTFRT  PTVQIDGDGM120
EWENITIANS  AGPVGQALAL  RVEGDRVVFR  HCRFLGWQDT  ILLNRGRQYF  ADCYIEGHVD180
FIFGGATAYF  DRCEIHALKD  GYLTAASTPK  GQTHGFVFAD  GKITGAAGVK  TYLGRPWRDY240
AQTVFLRTEM  SGVVRAEGWH  NWNKPQAEIT  TRYAEFGSTG  PGANPAGRVP  WAKALTAAAA300
AALTPAEVLR  GHDGWNPAGR  APIARKVRIV  LVGDSTVTDE  VGWGRGFKQL  LTDATECINT360
ARGGRSSKSF  RAEGHWPPAL  ALHGDYYLIQ  FGHNDQPGKG  PARETDAGTT  FLANMARYVD420
EVRAIGAQPI  LVTSLTRRDF  DHEGRGKIVS  TLTPYVDAVR  KVAAEKRVPL  VDLYARSVEL480
CERLGPTESA  TFNPIKNGKP  DTTHLNAKGT  AAFAALVADE  LRRVVPELAP  FLRAEPATDV540
LRDIKYGEAD  GEPLLLDAHV  PVGAGPFPVA  ILVHGGGWSR  GDKHSVPAGD  GADISPWFAP600
LSAANFTWFS  INYRLAPEHR  WPACFDDVET  AIRWAKAHAA  EFKGDPQRMA  LFGHSSGGHL660
VCLAATLAGE  DTRVQAIVGF  APVTNHEQDL  AARGGLSPSL  QGLLNLPREV  TVGSRAVLRD720
ISPLNHVHAG  LPPFLLLHGE  ADKTVPLQQS  LDFQAKLRAN  GVRCDLLTIP  GAPHALETWA780
QLRPDYEAHY  IAWLREVLDA  PAERAPQ807

Predicted 3D structure by AlphaFold2 with pLDDT = 91.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRSWLAVFVA  CCLLPFGARA  TPDAVVATDG  SGQYRSVQEA  ISTAPLRTDP  ATPPWVILVK60
PGTYHERIYV  QRERGHVRIV  GEDAATTTIT  YDLSTGSPGP  DGKPIGTFRT  PTVQIDGDGM120
EWENITIANS  AGPVGQALAL  RVEGDRVVFR  HCRFLGWQDT  ILLNRGRQYF  ADCYIEGHVD180
FIFGGATAYF  DRCEIHALKD  GYLTAASTPK  GQTHGFVFAD  GKITGAAGVK  TYLGRPWRDY240
AQTVFLRTEM  SGVVRAEGWH  NWNKPQAEIT  TRYAEFGSTG  PGANPAGRVP  WAKALTAAAA300
AALTPAEVLR  GHDGWNPAGR  APIARKVRIV  LVGDSTVTDE  VGWGRGFKQL  LTDATECINT360
ARGGRSSKSF  RAEGHWPPAL  ALHGDYYLIQ  FGHNDQPGKG  PARETDAGTT  FLANMARYVD420
EVRAIGAQPI  LVTSLTRRDF  DHEGRGKIVS  TLTPYVDAVR  KVAAEKRVPL  VDLYARSVEL480
CERLGPTESA  TFNPIKNGKP  DTTHLNAKGT  AAFAALVADE  LRRVVPELAP  FLRAEPATDV540
LRDIKYGEAD  GEPLLLDAHV  PVGAGPFPVA  ILVHGGGWSR  GDKHSVPAGD  GADISPWFAP600
LSAANFTWFS  INYRLAPEHR  WPACFDDVET  AIRWAKAHAA  EFKGDPQRMA  LFGHSSGGHL660
VCLAATLAGE  DTRVQAIVGF  APVTNHEQDL  AARGGLSPSL  QGLLNLPREV  TVGSRAVLRD720
ISPLNHVHAG  LPPFLLLHGE  ADKTVPLQQS  LDFQAKLRAN  GVRCDLLTIP  GAPHALETWA780
QLRPDYEAHY  IAWLREVLDA  PAERAPQ807

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE8(24-310)+CE12(328-521)+CE1(639-781)

MRSWLAVFVA  CCLLPFGARA  TPDAVVATDG  SGQYRSVQEA  ISTAPLRTDP  ATPPWVILVK60
PGTYHERIYV  QRERGHVRIV  GEDAATTTIT  YDLSTGSPGP  DGKPIGTFRT  PTVQIDGDGM120
EWENITIANS  AGPVGQALAL  RVEGDRVVFR  HCRFLGWQDT  ILLNRGRQYF  ADCYIEGHVD180
FIFGGATAYF  DRCEIHALKD  GYLTAASTPK  GQTHGFVFAD  GKITGAAGVK  TYLGRPWRDY240
AQTVFLRTEM  SGVVRAEGWH  NWNKPQAEIT  TRYAEFGSTG  PGANPAGRVP  WAKALTAAAA300
AALTPAEVLR  GHDGWNPAGR  APIARKVRIV  LVGDSTVTDE  VGWGRGFKQL  LTDATECINT360
ARGGRSSKSF  RAEGHWPPAL  ALHGDYYLIQ  FGHNDQPGKG  PARETDAGTT  FLANMARYVD420
EVRAIGAQPI  LVTSLTRRDF  DHEGRGKIVS  TLTPYVDAVR  KVAAEKRVPL  VDLYARSVEL480
CERLGPTESA  TFNPIKNGKP  DTTHLNAKGT  AAFAALVADE  LRRVVPELAP  FLRAEPATDV540
LRDIKYGEAD  GEPLLLDAHV  PVGAGPFPVA  ILVHGGGWSR  GDKHSVPAGD  GADISPWFAP600
LSAANFTWFS  INYRLAPEHR  WPACFDDVET  AIRWAKAHAA  EFKGDPQRMA  LFGHSSGGHL660
VCLAATLAGE  DTRVQAIVGF  APVTNHEQDL  AARGGLSPSL  QGLLNLPREV  TVGSRAVLRD720
ISPLNHVHAG  LPPFLLLHGE  ADKTVPLQQS  LDFQAKLRAN  GVRCDLLTIP  GAPHALETWA780
QLRPDYEAHY  IAWLREVLDA  PAERAPQ807

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help