Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: QYJ89857.1
Basic Information
| GenBank ID | QYJ89857.1 |
| Family | CBM35 |
| Sequence Length | 2117 |
| UniProt ID | QYJ89857.1(MOD) |
| Average pLDDT? | 80.74 |
| CAZy50 ID | 1236 |
| CAZy50 Rep | Yes, QYJ89857.1 |
| Structure Cluster | SC_CBM35_clus12 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2864204 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella halotolerans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKKLCIPLIA TLSTSAFGDI NEDLVSWHKF EQVSGVSLSN EISGGMPLDI QGNYQLVPGP | 60 |
| KGNAIRIGGQ GNELKGLMNG WQPSEYTVSF WSRLAFPNGD KSFSHLGAGS DRFGFNIKRS | 120 |
| GEINSFVNYY NPLILSSSQQ LQPLQEWNHW TVSYDGQQLT LFQNGKQIAN QLSTEEVKPF | 180 |
| WEFKVAFGSE LANAADVDAS IDELRIYSRA LTGLDVWQLY DSPEAEYIGG VTLTLPPSPA | 240 |
| VAVNDAEITG SLYHFASGSH IPFSGGWGES LTLDNLPNGK YQLTLDTIAG YVPRLLPKVI | 300 |
| EISDANPSVQ QAVLYRDPIE VNELSPLPGV QVELFSQGLF QPRQMAMGNQ VLYVGSSAIP | 360 |
| VDNEGAAGLI YAMAIDPQTG KPGEPYVVAS GLEEPHGVAY RDGNLYFSTV GGLYRISDID | 420 |
| SRYRTLPTPE KIYTFPADEG TVLTGSFRYW HQKHPLKFNP YDPNDKGLYL AIGRPCNVCV | 480 |
| MEDRRYGTIL RLDLDTLQTT LVAEGIRNSV SFDWHPVTKE IWFSDNNRQG FDNPDEINRV | 540 |
| TSWGQHFGAP YVFGKDIIGI TQDEYDGITS AAVPAGGVLT DIAPADISIA NYRAPAFEVE | 600 |
| TNSAPLGVMF WDSYPAAANQ RHLLFATHGN GQKAVRPALE LRMLTVNDNG SVAFEQPLVN | 660 |
| GWMQDIDTAS YACLTSACIG RPVEMLELTD GSFLLSDDKA GVIYRVSYQT PALNSSLTIQ | 720 |
| VPVKPDAAIE DELLAGRLID AQGNERRFYV NWQESEFRFA GLPEGDYTVV MNSLPGWQPD | 780 |
| QSSYSLNISA SNLNPVLNWQ FQPEVLNGTL SVSLPAKPAG YTGTELPQVI VTGAQAQTLA | 840 |
| LNWGETRQLE LSFGRYQLAF SYLWGGLPSP TTQVIDLSES RPQIQVNLDY LITADAGKRI | 900 |
| AEQQCSACHG TGAQGLVTES IASNWIALGF DQLITKIDGM PLHCDSNCAE QAGRYLWETQ | 960 |
| WAQFGAPSLP PPAHEVQGTA PEAQIDSAQV QQGVISLSWS YANETGVPGA VSGQSLEYRY | 1020 |
| LQPTPSAWQS AVVSGLSTQL QPGFGGDIEL RLVTMDAQGS TSYSAPVQVN LSGLAMWKLS | 1080 |
| TDGLYIHWNF DQLSTNQAVD VSGNGLPLSI ESARYVEDAA AGYALKPFMK DYSAQLDLSV | 1140 |
| EQQVDLSQTD ITLSFWLQMK DEQDSWGRNQ LFYAGDNFAQ DALFFGTGGS YNFFIKTQQS | 1200 |
| GYNTWTSPAN VIVPGRWQMY TYVRKQNGDV TVYVNGQQVA QTQHLAPGNP LRRIVLDEFY | 1260 |
| DTALDEFRLY KRSLSADEVR TLYLNPTAGT KNAAGGAIDT GSMSGDQLWQ QFNCATCHGV | 1320 |
| DGLGATPILE SLYRDDIIDL IRDTMPYGNP GGCDQACAEN LYAWMYDEFI THGSNPPAMP | 1380 |
| PAIDSGLNAS IDDTQAAWLL YKATLNLGAR LPSAEEQQRL ADEGTAVLPQ LLDGLLEENG | 1440 |
| FAERIGEIYH DVLHTKGDMA SLGSVNAFAS NLGGDVNWFY KVTADTHMQG QLWLRTTNAH | 1500 |
| NAESTELVKY LVRNHRPFSE ILTADYTMVN YYNARSYGIE GQFNFRQQDE PEYEEFPWDE | 1560 |
| TDFQPVKLGI AHAGVMTNPV FMRRYPTTPT NRNRHRAYSF YKKFLATDIL EIGGERPKAE | 1620 |
| DLVGEGLPTL TNPVCTGCHQ VMDPVASSFQ HWAGSEYVWT MPTIPWDNKY WPQNEILAPG | 1680 |
| FNGKLSPSYF DPDVSPLQWL MGEAIQDSRF ALSVVRTLFE PVTGYPLLAK PLETDSDTSK | 1740 |
| SRYAAQQQDI NSLATGFSEG NFDLRALVKD LLLSDYALRD NAFGGSRLLL TPEQLARKVT | 1800 |
| AVFGQDWEEG VYFDWLEEQG TQLMYGGIDH LSVLDRQRVL SGTAATVQSW LANDFACQIV | 1860 |
| PQQLAQTADQ RLIAMGLDPE GVGIRIAPSE FVFSDGQLEV NAYQSVGYGD DYVYQFAWGD | 1920 |
| DKEISATLNV DQAGLYQLVL PYANGRDAPV QFQLYVDGQL WTDNLSLGYT KGWSRWTHEV | 1980 |
| TNAIALSAGS HEIRLKALGF SYVKIDGLFF RDVDRTEAAV RSNLQQLMYR MYGEVLASDS | 2040 |
| PQVTRAWQLY QQLLTTGRNA VRSDEASVQL DGACQVQTHR QAGVSYPYED NSDPHFYVRA | 2100 |
| WMATLTFMLK DYRFFYQ | 2117 |
Predicted 3D structure by AlphaFold2 with pLDDT = 80.74 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKKLCIPLIA TLSTSAFGDI NEDLVSWHKF EQVSGVSLSN EISGGMPLDI QGNYQLVPGP | 60 |
| KGNAIRIGGQ GNELKGLMNG WQPSEYTVSF WSRLAFPNGD KSFSHLGAGS DRFGFNIKRS | 120 |
| GEINSFVNYY NPLILSSSQQ LQPLQEWNHW TVSYDGQQLT LFQNGKQIAN QLSTEEVKPF | 180 |
| WEFKVAFGSE LANAADVDAS IDELRIYSRA LTGLDVWQLY DSPEAEYIGG VTLTLPPSPA | 240 |
| VAVNDAEITG SLYHFASGSH IPFSGGWGES LTLDNLPNGK YQLTLDTIAG YVPRLLPKVI | 300 |
| EISDANPSVQ QAVLYRDPIE VNELSPLPGV QVELFSQGLF QPRQMAMGNQ VLYVGSSAIP | 360 |
| VDNEGAAGLI YAMAIDPQTG KPGEPYVVAS GLEEPHGVAY RDGNLYFSTV GGLYRISDID | 420 |
| SRYRTLPTPE KIYTFPADEG TVLTGSFRYW HQKHPLKFNP YDPNDKGLYL AIGRPCNVCV | 480 |
| MEDRRYGTIL RLDLDTLQTT LVAEGIRNSV SFDWHPVTKE IWFSDNNRQG FDNPDEINRV | 540 |
| TSWGQHFGAP YVFGKDIIGI TQDEYDGITS AAVPAGGVLT DIAPADISIA NYRAPAFEVE | 600 |
| TNSAPLGVMF WDSYPAAANQ RHLLFATHGN GQKAVRPALE LRMLTVNDNG SVAFEQPLVN | 660 |
| GWMQDIDTAS YACLTSACIG RPVEMLELTD GSFLLSDDKA GVIYRVSYQT PALNSSLTIQ | 720 |
| VPVKPDAAIE DELLAGRLID AQGNERRFYV NWQESEFRFA GLPEGDYTVV MNSLPGWQPD | 780 |
| QSSYSLNISA SNLNPVLNWQ FQPEVLNGTL SVSLPAKPAG YTGTELPQVI VTGAQAQTLA | 840 |
| LNWGETRQLE LSFGRYQLAF SYLWGGLPSP TTQVIDLSES RPQIQVNLDY LITADAGKRI | 900 |
| AEQQCSACHG TGAQGLVTES IASNWIALGF DQLITKIDGM PLHCDSNCAE QAGRYLWETQ | 960 |
| WAQFGAPSLP PPAHEVQGTA PEAQIDSAQV QQGVISLSWS YANETGVPGA VSGQSLEYRY | 1020 |
| LQPTPSAWQS AVVSGLSTQL QPGFGGDIEL RLVTMDAQGS TSYSAPVQVN LSGLAMWKLS | 1080 |
| TDGLYIHWNF DQLSTNQAVD VSGNGLPLSI ESARYVEDAA AGYALKPFMK DYSAQLDLSV | 1140 |
| EQQVDLSQTD ITLSFWLQMK DEQDSWGRNQ LFYAGDNFAQ DALFFGTGGS YNFFIKTQQS | 1200 |
| GYNTWTSPAN VIVPGRWQMY TYVRKQNGDV TVYVNGQQVA QTQHLAPGNP LRRIVLDEFY | 1260 |
| DTALDEFRLY KRSLSADEVR TLYLNPTAGT KNAAGGAIDT GSMSGDQLWQ QFNCATCHGV | 1320 |
| DGLGATPILE SLYRDDIIDL IRDTMPYGNP GGCDQACAEN LYAWMYDEFI THGSNPPAMP | 1380 |
| PAIDSGLNAS IDDTQAAWLL YKATLNLGAR LPSAEEQQRL ADEGTAVLPQ LLDGLLEENG | 1440 |
| FAERIGEIYH DVLHTKGDMA SLGSVNAFAS NLGGDVNWFY KVTADTHMQG QLWLRTTNAH | 1500 |
| NAESTELVKY LVRNHRPFSE ILTADYTMVN YYNARSYGIE GQFNFRQQDE PEYEEFPWDE | 1560 |
| TDFQPVKLGI AHAGVMTNPV FMRRYPTTPT NRNRHRAYSF YKKFLATDIL EIGGERPKAE | 1620 |
| DLVGEGLPTL TNPVCTGCHQ VMDPVASSFQ HWAGSEYVWT MPTIPWDNKY WPQNEILAPG | 1680 |
| FNGKLSPSYF DPDVSPLQWL MGEAIQDSRF ALSVVRTLFE PVTGYPLLAK PLETDSDTSK | 1740 |
| SRYAAQQQDI NSLATGFSEG NFDLRALVKD LLLSDYALRD NAFGGSRLLL TPEQLARKVT | 1800 |
| AVFGQDWEEG VYFDWLEEQG TQLMYGGIDH LSVLDRQRVL SGTAATVQSW LANDFACQIV | 1860 |
| PQQLAQTADQ RLIAMGLDPE GVGIRIAPSE FVFSDGQLEV NAYQSVGYGD DYVYQFAWGD | 1920 |
| DKEISATLNV DQAGLYQLVL PYANGRDAPV QFQLYVDGQL WTDNLSLGYT KGWSRWTHEV | 1980 |
| TNAIALSAGS HEIRLKALGF SYVKIDGLFF RDVDRTEAAV RSNLQQLMYR MYGEVLASDS | 2040 |
| PQVTRAWQLY QQLLTTGRNA VRSDEASVQL DGACQVQTHR QAGVSYPYED NSDPHFYVRA | 2100 |
| WMATLTFMLK DYRFFYQ | 2117 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.