CAZyme3D

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Entry ID

Information for CAZyme ID: QYF97732.1

Basic Information

GenBank IDQYF97732.1
FamilyCBM20, GH31
Sequence Length966
UniProt IDA0A7H4H890(99.9,100)Download
Average pLDDT?92.57
CAZy50 ID15878
CAZy50 RepYes, QYF97732.1
Structure ClusterSC_CBM20_clus10, SC_GH31_clus96
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2861280
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. PAMC21962

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNALTLRRRV  ATLAIASIAA  ASLTALGGWA  DAAPAQAAPL  GVQRAEFTSG  SSYLVVEVLD60
DDLVHFEVAG  GGTSPGTSTA  LFTTPQIAKT  DYPGPETYTR  SGGTIQTAGL  RLDVDTSTLC120
VTATDITRTP  ELVLQTTCPV  GLTQAWKGLN  ITKSSIENAY  GFGQQFFTGA  SADGDWVGRV180
RSPGGTYGNA  MVYDAENGPV  GNTQIPVLFA  VGDANANYGL  FVDQLYKQEW  NLTGDPWTMR240
TWGDQLRWYL  MAGPDLPDLR  EDYMQLTGTP  PVPPKKAFGL  WVSEFGYDDW  SELDDTISGL300
RAADFPVDGA  MLDVQWFGGV  TADSDDTRMG  TLDWDTSSFP  NPASKIAALK  ADGVGIIPIE360
ESYVGKNLPE  HADMAADGYL  VRSGCSTCSP  AYLTGNPWWG  KGGMIDWTQP  AAGAAWHDEQ420
RQHLVDEGVM  GHWLDLGEPE  MYDANDWTAG  ILPGKHAHAD  YHNAYNLLWA  QSIADGYERN480
DEDARPFLLS  RAAAGGIQRF  GTAMWSADIG  STMKALASQQ  NTQLHMSMSG  IDYYGSDVGG540
FRREMLDADA  DELYTQWFAD  SAWFDTPLRP  HTENLCNCLE  TTPDAIGDVD  SNRANLVRRY600
ENAPYTYSLA  HRANRYGEPV  APPLVYYYQN  DDNVREMGHQ  KMLGRDLMVA  IVAGSGERER660
DVYLPAGDWI  DIHTNERIAS  TGQWIADVPL  WRNGVFTLPA  YARAGAIIPQ  AFVDAETKDI720
TGLRSDSTVH  DEQITTVYAD  DAATSFTLYE  DDGTSTAYQS  GAVRTTPISQ  STSGGVATVT780
VGAASGTYAG  APSTRPTIVK  LVTDDTQAAS  VTLNGSALTE  HANKAAFDAA  ASGWYNAGGN840
TVIAKAASSA  VGTAKTFAFT  LGEDAVWATF  ACEFATTTFG  QSVYVVGNIP  QLGNWSPASA900
IKLNPSAYPT  WTGVIENLPP  SSAIEWKCIK  RQEAGNPNTA  DAWEPGGNNV  LNTPPSGSAG960
ITTGAF966

Predicted 3D structure by AlphaFold2 with pLDDT = 92.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNALTLRRRV  ATLAIASIAA  ASLTALGGWA  DAAPAQAAPL  GVQRAEFTSG  SSYLVVEVLD60
DDLVHFEVAG  GGTSPGTSTA  LFTTPQIAKT  DYPGPETYTR  SGGTIQTAGL  RLDVDTSTLC120
VTATDITRTP  ELVLQTTCPV  GLTQAWKGLN  ITKSSIENAY  GFGQQFFTGA  SADGDWVGRV180
RSPGGTYGNA  MVYDAENGPV  GNTQIPVLFA  VGDANANYGL  FVDQLYKQEW  NLTGDPWTMR240
TWGDQLRWYL  MAGPDLPDLR  EDYMQLTGTP  PVPPKKAFGL  WVSEFGYDDW  SELDDTISGL300
RAADFPVDGA  MLDVQWFGGV  TADSDDTRMG  TLDWDTSSFP  NPASKIAALK  ADGVGIIPIE360
ESYVGKNLPE  HADMAADGYL  VRSGCSTCSP  AYLTGNPWWG  KGGMIDWTQP  AAGAAWHDEQ420
RQHLVDEGVM  GHWLDLGEPE  MYDANDWTAG  ILPGKHAHAD  YHNAYNLLWA  QSIADGYERN480
DEDARPFLLS  RAAAGGIQRF  GTAMWSADIG  STMKALASQQ  NTQLHMSMSG  IDYYGSDVGG540
FRREMLDADA  DELYTQWFAD  SAWFDTPLRP  HTENLCNCLE  TTPDAIGDVD  SNRANLVRRY600
ENAPYTYSLA  HRANRYGEPV  APPLVYYYQN  DDNVREMGHQ  KMLGRDLMVA  IVAGSGERER660
DVYLPAGDWI  DIHTNERIAS  TGQWIADVPL  WRNGVFTLPA  YARAGAIIPQ  AFVDAETKDI720
TGLRSDSTVH  DEQITTVYAD  DAATSFTLYE  DDGTSTAYQS  GAVRTTPISQ  STSGGVATVT780
VGAASGTYAG  APSTRPTIVK  LVTDDTQAAS  VTLNGSALTE  HANKAAFDAA  ASGWYNAGGN840
TVIAKAASSA  VGTAKTFAFT  LGEDAVWATF  ACEFATTTFG  QSVYVVGNIP  QLGNWSPASA900
IKLNPSAYPT  WTGVIENLPP  SSAIEWKCIK  RQEAGNPNTA  DAWEPGGNNV  LNTPPSGSAG960
ITTGAF966

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH31(248-708)+CBM20(868-958)

MNALTLRRRV  ATLAIASIAA  ASLTALGGWA  DAAPAQAAPL  GVQRAEFTSG  SSYLVVEVLD60
DDLVHFEVAG  GGTSPGTSTA  LFTTPQIAKT  DYPGPETYTR  SGGTIQTAGL  RLDVDTSTLC120
VTATDITRTP  ELVLQTTCPV  DLTQAWKGLN  ITKSSIENAY  GFGQQFFTGA  SADGDWVGRV180
RSPGGTYGNA  MVYDAENGPV  GNTQIPVLFA  VGDANANYGL  FVDQLYKQEW  NLTGDPWTMR240
TWGDQLRWYL  MAGPDLPDLR  EDYMQLTGTP  PVPPKKAFGL  WVSEFGYDDW  SELDDTISGL300
RAADFPVDGA  MLDVQWFGGV  TADSDDTRMG  TLDWDTSSFP  NPASKIAALK  ADGVGIIPIE360
ESYVGKNLPE  HADMAADGYL  VRSGCSTCSP  AYLTGNPWWG  KGGMIDWTQP  AAGAAWHDEQ420
RQHLVDEGVM  GHWLDLGEPE  MYDANDWTAG  ILPGKHAHAD  YHNAYNLLWA  QSIADGYERN480
DEDARPFLLS  RAAAGGIQRF  GTAMWSADIG  STMKALASQQ  NTQLHMSMSG  IDYYGSDVGG540
FRREMLDADA  DELYTQWFAD  SAWFDTPLRP  HTENLCNCLE  TTPDAIGDVD  SNRANLVRRY600
ENAPYTYSLA  HRANRYGEPV  APPLVYYYQN  DDNVREMGHQ  KMLGRDLMVA  IVAGSGERER660
DVYLPAGDWI  DIHTNERIAS  TGQWIADVPL  WRNGVFTLPA  YARAGAIIPQ  AFVDAETKDI720
TGLRSDSTVH  DEQITTVYAD  DAATSFTLYE  DDGTSTAYQS  GAVRTTPISQ  STSGGVATVT780
VGAASGTYAG  APSTRPTIVK  LVTDDTQAAS  VTLNGSALTE  HANKAAFDAA  ASGWYNAGGN840
TVIAKAASSA  VGTAKTFAFT  LGEDAVWATF  ACEFATTTFG  QSVYVVGNIP  QLGNWSPASA900
IKLNPSAYPT  WTGVIENLPP  SSAIEWKCIK  RQEAGNPNTA  DAWEPGGNNV  LNTPPSGSAG960
ITTGAF966

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help