CAZyme3D

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Entry ID

Information for CAZyme ID: QXV67584.1

Basic Information

GenBank IDQXV67584.1
FamilyGT51
Sequence Length756
UniProt IDA0A563UBP8(97.2,100)Download
Average pLDDT?84.96
CAZy50 ID32046
CAZy50 RepYes, QXV67584.1
Structure ClusterSC_GT51_clus40
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2778902
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter sp. 21P

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRIKVNPKY  LRIALIALAA  LVVIVLIGGY  VAYTKREVLL  QKAISKATAK  AKRDYNLDVK60
IGSARFTGLA  TVAFSDISVV  PQQRDSLFSV  KRFDVSVKVM  PLLFGNIKLG  DVVLQNAHLN120
LTNIKGVKNF  DFLFKKKKDT  TDTKSKVDLS  DVSNRLINEV  LYKIPDNLSL  QNFLMSFKDD180
STTVTLLTST  ASIKDGKLKS  TINVNNGEST  WHIDGKMVPS  DKNIDVHLYA  DGKKVELPLI240
EKKFKLKLNF  DTISTKLSDV  SHSSGETKIN  GSWSIRNLLL  NHKGLSTQDI  VVPNGSIDAN300
VVVGSNFISL  DSSSVIHLRK  LTANPYIKYT  LNPVKIYEAK  IKTGWQNAQD  VFDSFPTGMF360
ESLDGIQVTG  KLNYNFNLYL  DNSHLDDMVF  NSSLQKSNDF  RIVRYGKADL  GKLNNTFVYV420
PYEKGKPMPP  HTIGPSNPEF  TPLNQISPNL  RNAVMTAEDP  SFYSNRGFVD  ESIRKSFITN480
IKEKKFKRGG  STISMQLIKN  AFLTRNKTLS  RKIEEILIVW  LIENNRIMSK  NRMLEVYFNI540
IEWGRGIYGI  SEASHYYFGK  APSDLTLGES  IFLASIVPNP  KAGLYAFEAD  GTLRQRLHGY600
FNLIGRLMAK  RGLTEPDSNA  YGFYSVRLRE  GLRRQIAPID  TATADSLTRQ  TANDDDAPND660
AAAAPVYEEP  KKPSFFQRLF  GKKDTAQANA  EKKIEETNDA  IKARLKAEIE  RVKADYKNRI720
DNIDTAGKTK  KEIKAEKNRL  KDESKEKVRE  LKDRMP756

Predicted 3D structure by AlphaFold2 with pLDDT = 84.96 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRRIKVNPKY  LRIALIALAA  LVVIVLIGGY  VAYTKREVLL  QKAISKATAK  AKRDYNLDVK60
IGSARFTGLA  TVAFSDISVV  PQQRDSLFSV  KRFDVSVKVM  PLLFGNIKLG  DVVLQNAHLN120
LTNIKGVKNF  DFLFKKKKDT  TDTKSKVDLS  DVSNRLINEV  LYKIPDNLSL  QNFLMSFKDD180
STTVTLLTST  ASIKDGKLKS  TINVNNGEST  WHIDGKMVPS  DKNIDVHLYA  DGKKVELPLI240
EKKFKLKLNF  DTISTKLSDV  SHSSGETKIN  GSWSIRNLLL  NHKGLSTQDI  VVPNGSIDAN300
VVVGSNFISL  DSSSVIHLRK  LTANPYIKYT  LNPVKIYEAK  IKTGWQNAQD  VFDSFPTGMF360
ESLDGIQVTG  KLNYNFNLYL  DNSHLDDMVF  NSSLQKSNDF  RIVRYGKADL  GKLNNTFVYV420
PYEKGKPMPP  HTIGPSNPEF  TPLNQISPNL  RNAVMTAEDP  SFYSNRGFVD  ESIRKSFITN480
IKEKKFKRGG  STISMQLIKN  AFLTRNKTLS  RKIEEILIVW  LIENNRIMSK  NRMLEVYFNI540
IEWGRGIYGI  SEASHYYFGK  APSDLTLGES  IFLASIVPNP  KAGLYAFEAD  GTLRQRLHGY600
FNLIGRLMAK  RGLTEPDSNA  YGFYSVRLRE  GLRRQIAPID  TATADSLTRQ  TANDDDAPND660
AAAAPVYEEP  KKPSFFQRLF  GKKDTAQANA  EKKIEETNDA  IKARLKAEIE  RVKADYKNRI720
DNIDTAGKTK  KEIKAEKNRL  KDESKEKVRE  LKDRMP756

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(435-582)

MRRININPKY  LRIALIAIAA  LVVIVLIGGY  VAYTKREVLL  QKAISKATAK  AKRDYNLDVK60
IGSAKFIGMA  TVAFSDISVV  PEQRDSLFSV  KRFDVSVKVM  PLLFGNIKLG  DVVLQNAHLN120
LTNVKGVKNF  DFLFKKKKDT  TDTKSKVDLS  DVSNRLVNEV  LYKIPDNLSL  QNFLMSFKDD180
STTVTLLTST  ATIKDGKLKS  TINVNNGEST  WHIDGKMVPS  DKNIDVHLYA  DGKKVELPLI240
EKKFKLKLNF  DTISTKLSDV  SHSSGETKIN  GSWSIRNLLL  NHKGLSTQDI  IVPSGSIDAN300
VVVGSNFISL  DSSSVIHLKK  LTANPYIKYT  LNPVKIYEAK  IKTSWQNAQD  VFDSFPTGMF360
ESLEGIQVTG  KLNYNFNLYL  DNSHLDDMVF  NSGLQKSNDF  RIVKYGKADL  GKLNNTFVYV420
PYEQGKPMPP  HTIGPSNPEF  TPLNQISPNL  RNAVMTAEDP  SFYTNRGFVD  ESIRKSFITN480
IKEKKFKRGG  STISMQLIKN  AFLTRNKTLS  RKIEEILIVW  LIENNRIMSK  NRMLEVYFNI540
IEWGRGIYGI  SEASHYYFGK  APSDLTLGES  IFLASIVPNP  KAGLYAFEAD  GTLRQRLHGY600
FNLIGRLMAK  RGLTEPDSNA  YGFYTVRLRE  GLRRQIAPID  TATADSLTRQ  TANDDDAPND660
AAAAPVYEEP  KKPSFFQRLF  GKKDTAQANA  EKKIEETNDA  IKARLKAEIE  RVKADYKNRI720
DNIDTAGKTK  KEIKAEKNRL  KDEGKEKVRE  LKDRMP756

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help