CAZyme3D

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Entry ID

Information for CAZyme ID: QXV65251.1

Basic Information

GenBank IDQXV65251.1
FamilyGH2
Sequence Length713
UniProt IDA0A563U218(98.6,100)Download
Average pLDDT?91.82
CAZy50 ID37082
CAZy50 RepYes, QXV65251.1
Structure ClusterSC_GH2_clus95
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2778902
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter sp. 21P

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRFAKDVDT  GSVLPEYPRP  QLQRTDWMNL  NGIWQYKPGT  WQNEPYPKND  LGKRILVPFP60
VEAALSGVME  HHDRLWYRRN  FVIPAGWQGR  RVILHFGAVD  YDCEVFINDK  SVGKHQGGYD120
AFSFDVSDFL  TKGNQTITVK  VFDPTDGGGF  PRGKQTLNPQ  GIMYTSTTGI  WQTVWLEPVQ180
RTHIESVKMT  PDIDHSVLNL  SLQTAFGDQT  QFTAEIKENG  HTIQTYRGDA  SAPAQIKLKN240
PHLWSPDHPF  LYDMDITLRD  DAGKTVDVVK  TYFGMRKSSI  GYDGKFYRLY  LNNKPLFQYG300
PLDQGFWPDG  IYTAPTDAAL  RSDLEMIKKL  GFNMVRKHIK  VEPQRWYYWA  DKLGLLVWQD360
MPSPNSYTFG  TPPPEKEAFA  NELTRLVENH  YNSPSIVTWV  IFNENQGQHD  TKKYVALVRG420
LDQSRIVNEG  SGSNNVGVGD  LYDIHPYPAP  MYPRSKSQAN  VCGEFGGIGF  QPFEKVWNSK480
DLTQYVTMKN  TTDYLALYDK  FAGMLAKFRT  YNGLSAAVYT  EITDVEIELN  GLMTYDRVLK540
ADADKIRRSN  EKAMYQKVIN  KDVIILSTAE  TEPAKWSYTF  KMPKADWTTA  STDTSVWSQG600
EGGFGTFFTP  GAHIGTEWNT  SDIWLRRNFS  LRNVSHGNLK  NFKLRVHHDE  DCEIYINGKL660
VAKLNGWTSD  YEDVDMMPSF  QSALNKKGNN  IMAVHCKNTN  SGQYIDVGLV  LNR713

Predicted 3D structure by AlphaFold2 with pLDDT = 91.82 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTRFAKDVDT  GSVLPEYPRP  QLQRTDWMNL  NGIWQYKPGT  WQNEPYPKND  LGKRILVPFP60
VEAALSGVME  HHDRLWYRRN  FVIPAGWQGR  RVILHFGAVD  YDCEVFINDK  SVGKHQGGYD120
AFSFDVSDFL  TKGNQTITVK  VFDPTDGGGF  PRGKQTLNPQ  GIMYTSTTGI  WQTVWLEPVQ180
RTHIESVKMT  PDIDHSVLNL  SLQTAFGDQT  QFTAEIKENG  HTIQTYRGDA  SAPAQIKLKN240
PHLWSPDHPF  LYDMDITLRD  DAGKTVDVVK  TYFGMRKSSI  GYDGKFYRLY  LNNKPLFQYG300
PLDQGFWPDG  IYTAPTDAAL  RSDLEMIKKL  GFNMVRKHIK  VEPQRWYYWA  DKLGLLVWQD360
MPSPNSYTFG  TPPPEKEAFA  NELTRLVENH  YNSPSIVTWV  IFNENQGQHD  TKKYVALVRG420
LDQSRIVNEG  SGSNNVGVGD  LYDIHPYPAP  MYPRSKSQAN  VCGEFGGIGF  QPFEKVWNSK480
DLTQYVTMKN  TTDYLALYDK  FAGMLAKFRT  YNGLSAAVYT  EITDVEIELN  GLMTYDRVLK540
ADADKIRRSN  EKAMYQKVIN  KDVIILSTAE  TEPAKWSYTF  KMPKADWTTA  STDTSVWSQG600
EGGFGTFFTP  GAHIGTEWNT  SDIWLRRNFS  LRNVSHGNLK  NFKLRVHHDE  DCEIYINGKL660
VAKLNGWTSD  YEDVDMMPSF  QSALNKKGNN  IMAVHCKNTN  SGQYIDVGLV  LNR713

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(21-444)+CBM67(622-700)

MFNIRQYPFI  LFVSLIFSTS  LYAQSWQFKQ  APLMTRFAKD  VDTGSVLPEY  PRPQLQRTEW60
MNLNGIWQYK  PGTWQNEPYP  KNDLGKRILV  PFPVEAALSG  VMEHHDRLWY  RRNFVIPAGW120
RGRRVILHFG  AVDYECEVFI  NDKSVGKHQG  GYDAFSFDVS  DFLTKGNQTI  TVKVFDPTDG180
GGFPRGKQTL  NPQGIMYTST  TGIWQTVWLE  PVQRTHIESV  KMTPDIDHSV  LNLSLQTAFG240
DQTQFTAEIK  ENGHTIQTYR  GDASAPAQIK  LKNPHLWSPD  HPFLYDMDIT  LRDDAGKTVD300
VVKTYFGMRK  SSIGYDGKFY  RLYLNNKPLF  QYGPLDQGFW  PDGIYTAPTD  AALRSDLEMI360
KKLGFNMVRK  HIKVEPQRWY  YWADKLGLLV  WQDMPSPNSY  TFGTPPPEKE  AFANELTRLV420
ENHYNSPSIV  TWVIFNENQG  QHDTKKYVAL  VRGLDQSRIV  NEGSGSNNVG  VGDLYDIHPY480
PAPMYPRSKS  QANVCGEFGG  IGFQPFEKVW  NSKDLTQYVT  MKNTTDYLAL  YDKFAGMLAK540
FRTYNGLSAA  VYTEITDVEI  ELNGLMTYDR  VLKADADKIR  RSNEKAMYQK  VVNKDVIILS600
TAETEPAKWT  YTFKMPKADW  ATASTDTSVW  SQGEGGFGTF  FTPGAHIGTE  WNTSDIWLRR660
NFSLRNVSQG  NLKNIKLRVH  HDEDCEIYIN  GKLVAKLNGW  TSDYEDVSMM  PSFQSALNKK720
GNNLMAVHCK  NTNSGQYIDV  GLVLNR746

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help