CAZyme3D

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Entry ID

Information for CAZyme ID: QWU86163.1

Basic Information

GenBank IDQWU86163.1
FamilyGH17
Sequence Length535
UniProt IDA0A2V1AHS1(100,100)Download
Average pLDDT?65.69
CAZy50 ID62058
CAZy50 RepYes, QWU86163.1
Structure ClusterSC_GH17_clus122
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID45357
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilyMetschnikowiaceae
GenusCandida/Metschnikowiaceae
Species[Candida] haemuloni

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLKLLVVAA  MAAAAPIKEV  KRDDDVTLTT  TANIGWAELL  GGSAETSTAA  PAAPAADPTT60
TSEGLFAQFF  GGNAATTSTP  AAAATSAAET  TAAATTSSQG  FFAQLFGGSA  ATSTQAAPAA120
ASSTAAAAST  SSTGSGSGGF  FNSLLDIFNG  DGGSSSSSAT  ASSTSQDSGS  SSSSSGGWFS180
NLFGGLFGNS  SGSSDSSGSS  DSSGSSSSAG  ASSAYTPSSS  SNPFGAASSS  GRDTPGFTEP240
VTVDGTGDGS  GSSNPDSSSA  DIASNSQVAQ  VAAYAAKGGG  ITYSPYTKSG  QCKSASEVAS300
DISKLKGYGL  IRLYSVDCSG  IKNVANAISF  SQKMYLGVWS  IDNLDNDLSS  LAEQVESGSR360
GWSAVHTVAI  GNELVNAGTK  TATQVANAVK  EARSWFKSNA  PSYSGYIVTV  DTLAAVMNDS420
SMCDISDYLA  VNCHPYFSGI  EASTSGTWLK  SQVASLKSHC  NNGKDILVTE  SGWPSYGNTV480
GDAVPSLKNQ  FAAVKDLGNV  MGSSVIMFTM  YNDYWKDPGS  WNVEQHWGIY  GDPNV535

Predicted 3D structure by AlphaFold2 with pLDDT = 65.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNLKLLVVAA  MAAAAPIKEV  KRDDDVTLTT  TANIGWAELL  GGSAETSTAA  PAAPAADPTT60
TSEGLFAQFF  GGNAATTSTP  AAAATSAAET  TAAATTSSQG  FFAQLFGGSA  ATSTQAAPAA120
ASSTAAAAST  SSTGSGSGGF  FNSLLDIFNG  DGGSSSSSAT  ASSTSQDSGS  SSSSSGGWFS180
NLFGGLFGNS  SGSSDSSGSS  DSSGSSSSAG  ASSAYTPSSS  SNPFGAASSS  GRDTPGFTEP240
VTVDGTGDGS  GSSNPDSSSA  DIASNSQVAQ  VAAYAAKGGG  ITYSPYTKSG  QCKSASEVAS300
DISKLKGYGL  IRLYSVDCSG  IKNVANAISF  SQKMYLGVWS  IDNLDNDLSS  LAEQVESGSR360
GWSAVHTVAI  GNELVNAGTK  TATQVANAVK  EARSWFKSNA  PSYSGYIVTV  DTLAAVMNDS420
SMCDISDYLA  VNCHPYFSGI  EASTSGTWLK  SQVASLKSHC  NNGKDILVTE  SGWPSYGNTV480
GDAVPSLKNQ  FAAVKDLGNV  MGSSVIMFTM  YNDYWKDPGS  WNVEQHWGIY  GDPNV535

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(288-530)

MNLKLLVVAA  MAAAAPIKEV  KRDDDVTLTT  TANIGWAELL  GGSAETSTAA  PAAPAADPTT60
TSEGLFAQFF  GGNAATTSTP  AAAATSAAET  TAAATTSSQG  FFAQLFGGSA  ATSTQAAPAA120
ASSTAAAAST  SSTGSGSGGF  FNSLLDIFNG  DGGSSSSSAT  ASSTSQDSGS  SSSSSGGWFS180
NLFGGLFGNS  SGSSDSSGSS  DSSGSSSSAG  ASSAYTPSSS  SNPFGAASSS  GRDTPGFTEP240
VTVDGTGDGS  GSSNPDSSSA  DIASNSQVAQ  VAAYAAKGGG  ITYSPYTKSG  QCKSASEVAS300
DISKLKGYGL  IRLYSVDCSG  IKNVANAISF  SQKMYLGVWS  IDNLDNDLSS  LAEQVESGSR360
GWSAVHTVAI  GNELVNAGTK  TATQVANAVK  EARSWFKSNA  PSYSGYIVTV  DTLAAVMNDS420
SMCDISDYLA  VNCHPYFSGI  EASTSGTWLK  SQVASLKSHC  NNGKDILVTE  SGWPSYGNTV480
GDAVPSLKNQ  FAAVKDLGNV  MGSSVIMFTM  YNDYWKDPGS  WNVEQHWGIY  GDPNV535

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help