CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QWG04463.1

Basic Information

GenBank IDQWG04463.1
FamilyCBM36, CBM6, GH8
Sequence Length1054
UniProt IDA0A7X9TNH5(100,100)Download
Average pLDDT?84.04
CAZy50 ID12044
CAZy50 RepYes, QWG04463.1
Structure ClusterSC_CBM36_clus1, SC_CBM36_clus2, SC_CBM6_clus32, SC_CBM6_clus39, SC_GH8_clus12
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID367791
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNYLNEKVN  FRNNHVKPPS  FVKTIALLFI  SLLFFRVDCN  AVISNSGITI  QTETMTLGGA60
YAGTTTTPFD  GIILYANDDN  GSTTIQLSNA  PGVFDISLRG  ASTNASAAGV  SLEIDGTEIT120
TFSFSGTVPS  IDTKSIKIEG  NAGSKVIRLV  LKTDNGSNDT  LLDWISFTRT  GDIPPPPAPP180
TLPSEGAFYT  GNYRNMFKEA  GYTQQQIDDK  INSVYQQLFY  GDNDTERVYY  PKGTDEGYIL240
DIDNNDVRSE  GMSYGMMIAV  QMNKQEEFDR  IWKFAKTHMQ  HGPGNREGYF  RWIVDANGAE300
LDPNTASDGE  IYFITALYFA  SVRFGDRGGI  YNYRAEADYI  LEQIMNKGWP  HNQIIGSVPN360
MFNEEKKVCF  VPYAQASTYT  DPSYFLPSFY  EVWGMMAKTN  RQYWKDAAVV  ARDFFQAAAH420
PTTGLMPDYS  NYDGSPTGGH  KEDFVVDAWR  CAMNVAMDYA  WFKKDEREKT  ITDNIQDFFY480
NEGIYSYSSG  YTLDGNPLPG  TDYQAVGLVA  CNAMTSLAST  DAKSWEFINA  LWDRAPTTGR540
YRYYDGLLQM  MCLLHLSGNF  KAYVDGSTPP  VDPNPIPVTG  ITLTPSSLSL  VVGQTSNLSV600
SISPSNADDK  RVNYTSSNTN  IATVSTLGVV  QAIQEGSTTI  TATTVDGGFT  DETIITVSSP660
PTSGQTPYLG  SPQIIPGTIN  PVTFDNGGQD  VAYNDSDVDN  NGNGDRQDTD  VDTENRTNGG720
NIGWIAAGEW  LEYTVDINTT  ANYTLSAEVA  SPSSDGKFHI  EFNGVDKTGI  INVSSTGGWG780
TFTNVTASNV  SLTAGEQVMR  IVFDEGGFNL  GNLSFTEDNS  NGGGDNGGDN  GGNTGTCSFG840
LPSSEAFPTT  NTSFTHAHVL  GNGPDLSHVN  NISVNWSKEG  GQIWDFSMRT  NNGVPNWYVD900
LKTAITHTLG  SASPSITFSN  SGFSGLDGAY  WIGKEGSDVV  LVSKTSDFTI  YLSNSSSAPS960
CSNARLMTVN  STSNSDLENE  IQLYPNPATD  QVSIKGLKST  TTKIKIYTIS  GVLVSTSILN1020
EDERKLNVSA  LKKGTYVLQL  LSDDDYQIKK  LMIQ1054

Predicted 3D structure by AlphaFold2 with pLDDT = 84.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKNYLNEKVN  FRNNHVKPPS  FVKTIALLFI  SLLFFRVDCN  AVISNSGITI  QTETMTLGGA60
YAGTTTTPFD  GIILYANDDN  GSTTIQLSNA  PGVFDISLRG  ASTNASAAGV  SLEIDGTEIT120
TFSFSGTVPS  IDTKSIKIEG  NAGSKVIRLV  LKTDNGSNDT  LLDWISFTRT  GDIPPPPAPP180
TLPSEGAFYT  GNYRNMFKEA  GYTQQQIDDK  INSVYQQLFY  GDNDTERVYY  PKGTDEGYIL240
DIDNNDVRSE  GMSYGMMIAV  QMNKQEEFDR  IWKFAKTHMQ  HGPGNREGYF  RWIVDANGAE300
LDPNTASDGE  IYFITALYFA  SVRFGDRGGI  YNYRAEADYI  LEQIMNKGWP  HNQIIGSVPN360
MFNEEKKVCF  VPYAQASTYT  DPSYFLPSFY  EVWGMMAKTN  RQYWKDAAVV  ARDFFQAAAH420
PTTGLMPDYS  NYDGSPTGGH  KEDFVVDAWR  CAMNVAMDYA  WFKKDEREKT  ITDNIQDFFY480
NEGIYSYSSG  YTLDGNPLPG  TDYQAVGLVA  CNAMTSLAST  DAKSWEFINA  LWDRAPTTGR540
YRYYDGLLQM  MCLLHLSGNF  KAYVDGSTPP  VDPNPIPVTG  ITLTPSSLSL  VVGQTSNLSV600
SISPSNADDK  RVNYTSSNTN  IATVSTLGVV  QAIQEGSTTI  TATTVDGGFT  DETIITVSSP660
PTSGQTPYLG  SPQIIPGTIN  PVTFDNGGQD  VAYNDSDVDN  NGNGDRQDTD  VDTENRTNGG720
NIGWIAAGEW  LEYTVDINTT  ANYTLSAEVA  SPSSDGKFHI  EFNGVDKTGI  INVSSTGGWG780
TFTNVTASNV  SLTAGEQVMR  IVFDEGGFNL  GNLSFTEDNS  NGGGDNGGDN  GGNTGTCSFG840
LPSSEAFPTT  NTSFTHAHVL  GNGPDLSHVN  NISVNWSKEG  GQIWDFSMRT  NNGVPNWYVD900
LKTAITHTLG  SASPSITFSN  SGFSGLDGAY  WIGKEGSDVV  LVSKTSDFTI  YLSNSSSAPS960
CSNARLMTVN  STSNSDLENE  IQLYPNPATD  QVSIKGLKST  TTKIKIYTIS  GVLVSTSILN1020
EDERKLNVSA  LKKGTYVLQL  LSDDDYQIKK  LMIQ1054

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM36(52-167)+GH8(236-555)+CBM6(684-816)

MKNYLNEKVN  FRNNHVKPPS  FVKTIALLFI  SLLFFRVDCN  AVISNSGITI  QTETMTLGGA60
YAGTTTTPFD  GIILYANDDN  GSTTIQLSNA  PGVFDISLRG  ASTNASAAGV  SLEIDGTEIT120
TFSFSGTVPS  IDTKSIKIEG  NAGSKVIRLV  LKTDNGSNDT  LLDWISFTRT  GDIPPPPAPP180
TLPSEGAFYT  GNYRNMFKEA  GYTQQQIDDK  INSVYQQLFY  GDNDTERVYY  PKGTDEGYIL240
DIDNNDVRSE  GMSYGMMIAV  QMNKQEEFDR  IWKFAKTHMQ  HGPGNREGYF  RWIVDANGAE300
LDPNTASDGE  IYFITALYFA  SVRFGDRGGI  YNYRAEADYI  LEQIMNKGWP  HNQIIGSVPN360
MFNEEKKVCF  VPYAQASTYT  DPSYFLPSFY  EVWGMMAKTN  RQYWKDAAVV  ARDFFQAAAH420
PTTGLMPDYS  NYDGSPTGGH  KEDFVVDAWR  CAMNVAMDYA  WFKKDEREKT  ITDNIQDFFY480
NEGIYSYSSG  YTLDGNPLPG  TDYQAVGLVA  CNAMTSLAST  DAKSWEFINA  LWDRAPTTGR540
YRYYDGLLQM  MCLLHLSGNF  KAYVDGSTPP  VDPNPIPVTG  ITLTPSSLSL  VVGQTSNLSV600
SISPSNADDK  RVNYTSSNTN  IATVSTLGVV  QAIQEGSTTI  TATTVDGGFT  DETIITVSSP660
PTSGQTPYLG  SPQIIPGTIN  PVTFDNGGQD  VAYNDSDVDN  NGNGDRQDTD  VDTENRTNGG720
NIGWIAAGEW  LEYTVDINTT  ANYTLSAEVA  SPSSDGKFHI  EFNGVDKTGI  INVSSTGGWG780
TFTNVTASNV  SLTAGEQVMR  IVFDEGGFNL  GNLSFTEDNS  NGGGDNGGDN  GGNTGTCSFG840
LPSSEAFPTT  NTSFTHAHVL  GNGPDLSHVN  NISVNWSKEG  GQIWDFSMRT  NNGVPNWYVD900
LKTAITHTLG  SASPSITFSN  SGFSGLDGAY  WIGKEGSDVV  LVSKTSDFTI  YLSNSSSAPS960
CSNARLMTVN  STSNSDLENE  IQLYPNPATD  QVSIKGLKST  TTKIKIYTIS  GVLVSTSILN1020
EDERKLNVSA  LKKGTYVLQL  LSDDDYQIKK  LMIQ1054

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help