CAZyme3D

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Entry ID

Information for CAZyme ID: QWG03215.1

Basic Information

GenBank IDQWG03215.1
FamilyGH5_39
Sequence Length393
UniProt IDA0A7X9Y382(100,100)Download
Average pLDDT?90.93
CAZy50 ID102732
CAZy50 RepYes, QWG03215.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID367791
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLLKILVIL  GLLFGSACSS  DDEVNVVDPD  EDDDDITELP  LNEVPQTRID  YLKKGVNLGH60
WFAQTSITEA  SLNSRFNDAD  FDFIENSGFT  YVRLSIDESV  LIAEEDYSQV  NPQYLTILED120
NIQKFIDRDI  AVLFDFHTTD  EFKNRVHEDI  IFANKIKQFW  GVAAKHFKKY  DPDMLYFEVF180
NEPWTLNAEE  WYDMQEDWVK  VIRSNAPLHT  IVVDGNLRVT  ENNWDDVEAF  ILQKPLDDKN240
IVYNLHCYAP  MAFTHQAATW  GWTTLQYIEG  LEWPANTDNA  NSVKNNANKV  EVTWAMDDYL300
RINWNKDELG  KIIKKVGDWQ  KKYNVPVTCN  EFGVYEYKSP  KQSRLLYTQD  MREALEENNI360
GWAVWEYDAG  FKVIDRRNGQ  VVWVDGMQSA  LGL393

Predicted 3D structure by AlphaFold2 with pLDDT = 90.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKLLKILVIL  GLLFGSACSS  DDEVNVVDPD  EDDDDITELP  LNEVPQTRID  YLKKGVNLGH60
WFAQTSITEA  SLNSRFNDAD  FDFIENSGFT  YVRLSIDESV  LIAEEDYSQV  NPQYLTILED120
NIQKFIDRDI  AVLFDFHTTD  EFKNRVHEDI  IFANKIKQFW  GVAAKHFKKY  DPDMLYFEVF180
NEPWTLNAEE  WYDMQEDWVK  VIRSNAPLHT  IVVDGNLRVT  ENNWDDVEAF  ILQKPLDDKN240
IVYNLHCYAP  MAFTHQAATW  GWTTLQYIEG  LEWPANTDNA  NSVKNNANKV  EVTWAMDDYL300
RINWNKDELG  KIIKKVGDWQ  KKYNVPVTCN  EFGVYEYKSP  KQSRLLYTQD  MREALEENNI360
GWAVWEYDAG  FKVIDRRNGQ  VVWVDGMQSA  LGL393

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_39(72-368)

MKLLKILVIL  GLLFGSACSS  DDEVNVVDPD  EDDDDITELP  LNEVPQTRID  YLKKGVNLGH60
WFAQTSITEA  SLNSRFNDAD  FDFIENSGFT  YVRLSIDESV  LIAEEDYSQV  NPQYLTILED120
NIQKFIDRDI  AVLFDFHTTD  EFKNRVHEDI  IFANKIKQFW  GVAAKHFKKY  DPDMLYFEVF180
NEPWTLNAEE  WYDMQEDWVK  VIRSNAPLHT  IVVDGNLRVT  ENNWDDVEAF  ILQKPLDDKN240
IVYNLHCYAP  MAFTHQAATW  GWTTLQYIEG  LEWPANTDNA  NSVKNNANKV  EVTWAMDDYL300
RINWNKDELG  KIIKKVGDWQ  KKYNVPVTCN  EFGVYEYKSP  KQSRLLYTQD  MREALEENNI360
GWAVWEYDAG  FKVIDRRNGQ  VVWVDGMQSA  LGL393

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help