CAZyme3D

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Entry ID

Information for CAZyme ID: QVJ80218.1

Basic Information

GenBank IDQVJ80218.1
FamilyGH5_46
Sequence Length421
UniProt IDA0A1H1D0K6(100,100)Download
Average pLDDT?91.78
CAZy50 ID89019
CAZy50 RepYes, QVJ80218.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID839
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter ruminicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKAFVYLFA  LLLMACNVGK  QNNANGFVTI  NGHDLIKPNG  EKLLIQGTNL  GNWLNPEGYM60
FGFGRTNSAW  MIDLMMKEAV  GPDATAEFWQ  QFKDNYVTRK  DIDFIANQGA  NTIRLPFNYK120
LFCDEDYMGQ  TGKKDGYARI  DSVITWCKAN  NLYLILDMHD  CPGGQTGDNI  DDGHGYPWLF180
ESEKCQQQFC  NIWREIAYRY  RSETTILGYE  LMNEPIAHYF  ANKDSLYQLL  QPVYKKAVEA240
IRQVDKNHII  LLGGAHWNSF  FWMLNDSTYD  DKLMYTCHRY  GGPATKEAIT  HYINFRDSIN300
RPMYMGEFGH  NTMEWQRDFV  KVLKENNIGY  TFWPYKKVDE  SCMMGIKRPE  GWDSIVVKYA360
ETSRNTYQEW  REARPNQAQF  RQLLKQFAEN  CRIENCKPQA  EYIQSMGMGK  LKKQKGEKVR420
K421

Predicted 3D structure by AlphaFold2 with pLDDT = 91.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKAFVYLFA  LLLMACNVGK  QNNANGFVTI  NGHDLIKPNG  EKLLIQGTNL  GNWLNPEGYM60
FGFGRTNSAW  MIDLMMKEAV  GPDATAEFWQ  QFKDNYVTRK  DIDFIANQGA  NTIRLPFNYK120
LFCDEDYMGQ  TGKKDGYARI  DSVITWCKAN  NLYLILDMHD  CPGGQTGDNI  DDGHGYPWLF180
ESEKCQQQFC  NIWREIAYRY  RSETTILGYE  LMNEPIAHYF  ANKDSLYQLL  QPVYKKAVEA240
IRQVDKNHII  LLGGAHWNSF  FWMLNDSTYD  DKLMYTCHRY  GGPATKEAIT  HYINFRDSIN300
RPMYMGEFGH  NTMEWQRDFV  KVLKENNIGY  TFWPYKKVDE  SCMMGIKRPE  GWDSIVVKYA360
ETSRNTYQEW  REARPNQAQF  RQLLKQFAEN  CRIENCKPQA  EYIQSMGMGK  LKKQKGEKVR420
K421

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_46(83-339)

MKKAFVYLFA  LLLMACNVGK  QNNANGFVTI  NGHDLIKPNG  EKLLIQGTNL  GNWLNPEGYM60
FGFGRTNSAW  MIDLMMKEAV  GPDATAEFWQ  QFKDNYVTRK  DIDFIANQGA  NTIRLPFNYK120
LFCDEDYMGQ  TGKKDGYARI  DSVITWCKAN  NLYLILDMHD  CPGGQTGDNI  DDGHGYPWLF180
ESEKCQQQFC  NIWREIAYRY  RSETTILGYE  LMNEPIAHYF  ANKDSLYQLL  QPVYKKAVEA240
IRQVDKNHII  LLGGAHWNSF  FWMLNDSTYD  DKLMYTCHRY  GGPATKEAIT  HYINFRDSIN300
RPMYMGEFGH  NTMEWQRDFV  KVLKENNIGY  TFWPYKKVDE  SCMMGIKRPE  GWDSIVVKYA360
ETSRNTYQEW  REARPNQAQF  RQLLKQFAEN  CRIENCKPQA  EYIQSMGMGK  LKKQKGEKVR420
K421

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help