CAZyme3D

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Entry ID

Information for CAZyme ID: QUT85482.1

Basic Information

GenBank IDQUT85482.1
FamilyPL10_2
Sequence Length502
UniProt IDA0A0P0M5G3(100,100)Download
Average pLDDT?90.79
CAZy50 ID68372
CAZy50 RepYes, QUT85482.1
Structure ClusterSC_PL10_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID357276
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKMICMAVML  FITLLSAGAQ  KNIPASDIKV  AMMKATRFMV  EKVSNRGGYL  WNYSPDFSRC60
WGELEAKPSM  IWIEAGTPAM  GNVFLNAYQL  TGESYYLKAA  QAAADALIWG  QHSSGGWPYM120
LDFSGETSLK  QWYSKVQKGY  IHCAQEHAHY  YGNCTYDDAA  TYDSGMFLLR  MYLLTLDPKY180
KYPVERCLDF  VLESQYPIGG  WPQRYPLHYE  YVKGDKEDYT  SFITINDGVH  TNNINFLLAC240
YTLLGETRAL  EPLQRAMTCV  LALQGGKPQA  GWAMQHKLDL  NYSPGHARDF  EPAGYAATAT300
AEMCRNLMRF  YRWTGDTKYL  ARIPDAFEFL  ESIRYNDAQM  KQLGKSVKPG  QILCPTFVEV360
GTNRPLYLHN  DPDHYWVDYD  YHGLITHYSS  TRAIDLQSLK  DEYQHLLSLS  KEEVTKDSPF420
IGQTDISGTL  LSHLMRGKMQ  QADTQKVDSL  LTILKKKDYL  PGRLPSVSKE  NPGFSNAPLP480
SEVISIKEYM  NGMSTFIQYL  TK502

Predicted 3D structure by AlphaFold2 with pLDDT = 90.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKMICMAVML  FITLLSAGAQ  KNIPASDIKV  AMMKATRFMV  EKVSNRGGYL  WNYSPDFSRC60
WGELEAKPSM  IWIEAGTPAM  GNVFLNAYQL  TGESYYLKAA  QAAADALIWG  QHSSGGWPYM120
LDFSGETSLK  QWYSKVQKGY  IHCAQEHAHY  YGNCTYDDAA  TYDSGMFLLR  MYLLTLDPKY180
KYPVERCLDF  VLESQYPIGG  WPQRYPLHYE  YVKGDKEDYT  SFITINDGVH  TNNINFLLAC240
YTLLGETRAL  EPLQRAMTCV  LALQGGKPQA  GWAMQHKLDL  NYSPGHARDF  EPAGYAATAT300
AEMCRNLMRF  YRWTGDTKYL  ARIPDAFEFL  ESIRYNDAQM  KQLGKSVKPG  QILCPTFVEV360
GTNRPLYLHN  DPDHYWVDYD  YHGLITHYSS  TRAIDLQSLK  DEYQHLLSLS  KEEVTKDSPF420
IGQTDISGTL  LSHLMRGKMQ  QADTQKVDSL  LTILKKKDYL  PGRLPSVSKE  NPGFSNAPLP480
SEVISIKEYM  NGMSTFIQYL  TK502

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_2(111-390)

MKMICMAVML  FITLLSAGAQ  KNIPASDIKV  AMMKATRFMV  EKVSNRGGYL  WNYSPDFSRC60
WGELEAKPSM  IWIEAGTPAM  GNVFLNAYQL  TGESYYLKAA  QAAADALIWG  QHSSGGWPYM120
LDFSGETSLK  QWYSKVQKGY  IHCAQEHAHY  YGNCTYDDAA  TYDSGMFLLR  MYLLTLDPKY180
KYPVERCLDF  VLESQYPIGG  WPQRYPLHYE  YVKGDKEDYT  SFITINDGVH  TNNINFLLAC240
YTLLGETRAL  EPLQRAMTCV  LALQGGKPQA  GWAMQHKLDL  NYSPGHARDF  EPAGYAATAT300
AEMCRNLMRF  YRWTGDTKYL  ARIPDAFEFL  ESIRYNDAQM  KQLGKSVKPG  QILCPTFVEV360
GTNRPLYLHN  DPDHYWVDYD  YHGLITHYSS  TRAIDLQSLK  DEYQHLLSLS  KEEVTKDSPF420
IGQTDISGTL  LSHLMRGKMQ  QADTQKVDSL  LTILKKKDYL  PGRLPSVSKE  NPGFSNAPLP480
SEVISIKEYM  NGMSTFIQYL  TK502

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help