CAZyme3D

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Entry ID

Information for CAZyme ID: QUT50629.1

Basic Information

GenBank IDQUT50629.1
FamilyGH5_38
Sequence Length145
UniProt IDA0A3R6FKU3(96.8,86.9)Download
Average pLDDT?93.44
CAZy50 ID184752
CAZy50 RepYes, QUT50629.1
Structure ClusterSC_GH5_clus305
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID46503
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEKKAWLICI  CCICCICCIC  GVSAQKKNNF  SVKRGVNISH  WLSQSNVRGE  NRAVFFTEAD60
VKFLSEVGFD  HLRLPVDEEQ  MFAPDGSKEK  EAFSLLHNAL  SWCQKYRLKA  IVDLHILRSH120
HFNAKENLFL  LIGKSRFDFM  IYGSN145

Predicted 3D structure by AlphaFold2 with pLDDT = 93.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEKKAWLICI  CCICCICCIC  GVSAQKKNNF  SVKRGVNISH  WLSQSNVRGE  NRAVFFTEAD60
VKFLSEVGFD  HLRLPVDEEQ  MFAPDGSKEK  EAFSLLHNAL  SWCQKYRLKA  IVDLHILRSH120
HFNAKENLFL  LIGKSRFDFM  IYGSN145

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MEKKAWLICI  CCLCCMCGVS  APKKNNFSVK  RGVNISHWLS  QSNVRGENRA  VFFTEADVKF60
LSEVGFDHLR  LPVDEEQMFA  PDGSKEKEAF  SLLHNALSWC  QKYRLKAIVD  LHILRSHHFN120
AKEKPLFTDR  KEQIRFYDLW  KQLSQELHTY  SVDFLAYELM  NEPVADDHEQ  WNNIVAECVR180
TIRLLEPERS  LLVGSNRWQG  YETMRYLKIP  ENDPNLIISF  HYYNPFLLTH  YRAGWTDVKD240
YTGKVHYPGK  LIADEDLKHL  KGELYDKFAY  WNKVEFNKEV  IEKHFKEVVD  FARLHQLPLY300
CGEFGCIAAT  PKADKERWYQ  DMIELFDKYE  IARANWDYKG  GFGIIEQGIP  QTDLIYILTG360
RNIK364

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help