CAZyme3D

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Entry ID

Information for CAZyme ID: QUL53321.1

Basic Information

GenBank IDQUL53321.1
FamilyCBM22, CBM9, GH10
Sequence Length1442
UniProt IDQUL53321.1(MOD)Download
Average pLDDT?86.10
CAZy50 ID4497
CAZy50 RepYes, QUL53321.1
Structure ClusterSC_CBM22_clus23, SC_CBM22_clus24, SC_CBM22_clus4, SC_CBM22_clus8, SC_CBM9_clus1, SC_CBM9_clus13, SC_CBM9_clus24, SC_GH10_clus100
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1873425
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus tritici

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFGRKRIMIG  GLALVVFAAS  VLPMRTTVYA  AAEGGPAVIL  ASDYEDGTAQ  GWTRKGDEQL60
TVTKEVYHRG  SYSLYADGRT  KDWEGPNQVL  TDHMAPHTAY  TVGAWVKSPA  PVKFTVHTKI120
GEIEDWKPVA  EFSGAKWSGE  WTYLEGTFVT  GSTVGFTEMY  AEAAAGTAFY  VDDIKISAAA180
VDVPEGEEGL  RTDFEDGTLQ  GWKNRIGPES  LSVSQDTANT  GAHSMLVEGR  ERSFYGPSLS240
VKDHMRPGTS  YQFSLYVRLK  EKPEADKSLQ  MTVYKKAGSE  SWNAIDKVSI  KADQWEQWHL300
LKGKFQYSDQ  PSEMNLFVET  PYITEDTVDT  LSFYVDDVLI  EPAPEMSIEQ  DIPGLKEVYA360
DDFAIGAAAY  SWQMEGVYGE  LLKKHFNSIT  ATYEMKPKFI  APAEGTYVFG  GADQYVNFAQ420
ANGMGLRGHA  LLWHTDAAEW  MFTDGGKPAS  RELLLERLQA  YIETVMQRYE  GKIYAWDVVN480
EAIADNGGGP  DGMRLTPWYN  LIGPDYIEKA  FEFARAANPE  AKLYYNDYYT  EVPEKREHIY540
KLLKQLKAKN  LIDGVGLQSH  HGLYSPTTQE  INKTIQMYSQ  LGLDIQITEL  DVDTGISPDL600
PLPASIAAQQ  GKRYKDLFEL  YKKYKDNISS  VSIWGVQDEK  SYNNHAMLFD  EQLKAKPAYW660
GAVDPSKLPA  IQNVAVALEG  TPQAGEAGKT  LWNKTAAVPL  EQGSTVTAKI  HTLWDPQNLY720
VKVDVTDPSV  NGEDKVEIFL  DENNGKTSAY  EPDDRKITLQ  RSGSGTEGVG  FTSTEREGGY780
TLEAKIPLVS  ISGSAGLEMG  LDIRVSDAGV  PNAVPAYWND  RSRSQDTDTS  RYGVLRLAAM840
PNSAESLKGQ  VKIDGQMEPE  WEKAKPFQVK  MSAAPNSTTA  EARSMWSEDS  LYLIIDVKDT900
LLKADAVNPW  DQDSVEIFID  ENFNRTPYYE  GDDGQYRINI  NNVASFGGGA  SVSRLTSAVV960
HTDTGYRVEA  KIDFGTVKAT  PGSSIGLDIQ  INDDQGGGKR  STSKWNDTGE  DTWRDTSNFG1020
ILSFVSPAAL  PEAPLEGKSP  SPSSGSAPTS  QAPAPAETFT  EGRIVVQPVA  DKDGILHVKL1080
SPEAVQQAVL  QSLGSGILKI  AVKSAPGAGE  LQLQLPLQSL  AAQPKIKEIQ  MESGLGAVLR1140
LNTQLLKLQD  TQAGDFLQLE  VKRAKQDGWP  AAVKDRLNGA  DVLDFALAIH  GAKTTEIDAT1200
ALTVRLPYEL  KAGERAHQLV  VYQVLENSKL  VIVKERKYDP  ATGYVSFQAK  VLGRYAVATV1260
KLPDQKGSKW  AAESIEALAA  RGILPLGAEA  SYEAGALMNR  AEFAQLLVNA  FDLQTAAGAP1320
DFKDVSKDSP  YAEAIGIAGA  LGIVKGRADG  LYSPSDTLSR  QEMALMIYRV  VQLQQIGLKS1380
DSPAVQGFKD  MNLLTGEASA  AVEKLRSAGV  IQGAQNGYFL  PKGRMTKEQA  AVVVYRIISL1440
NP1442

Predicted 3D structure by AlphaFold2 with pLDDT = 86.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFGRKRIMIG  GLALVVFAAS  VLPMRTTVYA  AAEGGPAVIL  ASDYEDGTAQ  GWTRKGDEQL60
TVTKEVYHRG  SYSLYADGRT  KDWEGPNQVL  TDHMAPHTAY  TVGAWVKSPA  PVKFTVHTKI120
GEIEDWKPVA  EFSGAKWSGE  WTYLEGTFVT  GSTVGFTEMY  AEAAAGTAFY  VDDIKISAAA180
VDVPEGEEGL  RTDFEDGTLQ  GWKNRIGPES  LSVSQDTANT  GAHSMLVEGR  ERSFYGPSLS240
VKDHMRPGTS  YQFSLYVRLK  EKPEADKSLQ  MTVYKKAGSE  SWNAIDKVSI  KADQWEQWHL300
LKGKFQYSDQ  PSEMNLFVET  PYITEDTVDT  LSFYVDDVLI  EPAPEMSIEQ  DIPGLKEVYA360
DDFAIGAAAY  SWQMEGVYGE  LLKKHFNSIT  ATYEMKPKFI  APAEGTYVFG  GADQYVNFAQ420
ANGMGLRGHA  LLWHTDAAEW  MFTDGGKPAS  RELLLERLQA  YIETVMQRYE  GKIYAWDVVN480
EAIADNGGGP  DGMRLTPWYN  LIGPDYIEKA  FEFARAANPE  AKLYYNDYYT  EVPEKREHIY540
KLLKQLKAKN  LIDGVGLQSH  HGLYSPTTQE  INKTIQMYSQ  LGLDIQITEL  DVDTGISPDL600
PLPASIAAQQ  GKRYKDLFEL  YKKYKDNISS  VSIWGVQDEK  SYNNHAMLFD  EQLKAKPAYW660
GAVDPSKLPA  IQNVAVALEG  TPQAGEAGKT  LWNKTAAVPL  EQGSTVTAKI  HTLWDPQNLY720
VKVDVTDPSV  NGEDKVEIFL  DENNGKTSAY  EPDDRKITLQ  RSGSGTEGVG  FTSTEREGGY780
TLEAKIPLVS  ISGSAGLEMG  LDIRVSDAGV  PNAVPAYWND  RSRSQDTDTS  RYGVLRLAAM840
PNSAESLKGQ  VKIDGQMEPE  WEKAKPFQVK  MSAAPNSTTA  EARSMWSEDS  LYLIIDVKDT900
LLKADAVNPW  DQDSVEIFID  ENFNRTPYYE  GDDGQYRINI  NNVASFGGGA  SVSRLTSAVV960
HTDTGYRVEA  KIDFGTVKAT  PGSSIGLDIQ  INDDQGGGKR  STSKWNDTGE  DTWRDTSNFG1020
ILSFVSPAAL  PEAPLEGKSP  SPSSGSAPTS  QAPAPAETFT  EGRIVVQPVA  DKDGILHVKL1080
SPEAVQQAVL  QSLGSGILKI  AVKSAPGAGE  LQLQLPLQSL  AAQPKIKEIQ  MESGLGAVLR1140
LNTQLLKLQD  TQAGDFLQLE  VKRAKQDGWP  AAVKDRLNGA  DVLDFALAIH  GAKTTEIDAT1200
ALTVRLPYEL  KAGERAHQLV  VYQVLENSKL  VIVKERKYDP  ATGYVSFQAK  VLGRYAVATV1260
KLPDQKGSKW  AAESIEALAA  RGILPLGAEA  SYEAGALMNR  AEFAQLLVNA  FDLQTAAGAP1320
DFKDVSKDSP  YAEAIGIAGA  LGIVKGRADG  LYSPSDTLSR  QEMALMIYRV  VQLQQIGLKS1380
DSPAVQGFKD  MNLLTGEASA  AVEKLRSAGV  IQGAQNGYFL  PKGRMTKEQA  AVVVYRIISL1440
NP1442

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM22(38-162)+CBM22(192-321)+GH10(355-664)+CBM9(691-837)+CBM9(853-1022)+SLH(1322-1362)

MFGRKRIMIG  GLALVVFAAS  VLPMRTTVYA  AAEGGPAVIL  ASDYEDGTAQ  GWTRKGDEQL60
TVTKEVYHRG  SYSLYADGRT  KDWEGPNQVL  TDHMAPHTAY  TVGAWVKSPA  PVKFTVHTKI120
GEIEDWKPVA  EFSGAKWSGE  WTYLEGTFVT  GSTVGFTEMY  AEAAAGTAFY  VDDIKISAAA180
VDVPEGEEGL  RTDFEDGTLQ  GWKNRIGPES  LSVSQDTANT  GAHSMLVEGR  ERSFYGPSLS240
VKDHMRPGTS  YQFSLYVRLK  EKPEADKSLQ  MTVYKKAGSE  SWNAIDKVSI  KADQWEQWHL300
LKGKFQYSDQ  PSEMNLFVET  PYITEDTVDT  LSFYVDDVLI  EPAPEMSIEQ  DIPGLKEVYA360
DDFAIGAAAY  SWQMEGVYGE  LLKKHFNSIT  ATYEMKPKFI  APAEGTYVFG  GADQYVNFAQ420
ANGMGLRGHA  LLWHTDAAEW  MFTDGGKPAS  RELLLERLQA  YIETVMQRYE  GKIYAWDVVN480
EAIADNGGGP  DGMRLTPWYN  LIGPDYIEKA  FEFARAANPE  AKLYYNDYYT  EVPEKREHIY540
KLLKQLKAKN  LIDGVGLQSH  HGLYSPTTQE  INKTIQMYSQ  LGLDIQITEL  DVDTGISPDL600
PLPASIAAQQ  GKRYKDLFEL  YKKYKDNISS  VSIWGVQDEK  SYNNHAMLFD  EQLKAKPAYW660
GAVDPSKLPA  IQNVAVALEG  TPQAGEAGKT  LWNKTAAVPL  EQGSTVTAKI  HTLWDPQNLY720
VKVDVTDPSV  NGEDKVEIFL  DENNGKTSAY  EPDDRKITLQ  RSGSGTEGVG  FTSTEREGGY780
TLEAKIPLVS  ISGSAGLEMG  LDIRVSDAGV  PNAVPAYWND  RSRSQDTDTS  RYGVLRLAAM840
PNSAESLKGQ  VKIDGQMEPE  WEKAKPFQVK  MSAAPNSTTA  EARSMWSEDS  LYLIIDVKDT900
LLKADAVNPW  DQDSVEIFID  ENFNRTPYYE  GDDGQYRINI  NNVASFGGGA  SVSRLTSAVV960
HTDTGYRVEA  KIDFGTVKAT  PGSSIGLDIQ  INDDQGGGKR  STSKWNDTGE  DTWRDTSNFG1020
ILSFVSPAAL  PEAPLEGKSP  SPSSGSAPTS  QAPAPAETFT  EGRIVVQPVA  DKDGILHVKL1080
SPEAVQQAVL  QSLGSGILKI  AVKSAPGAGE  LQLQLPLQSL  AAQPKIKEIQ  MESGLGAVLR1140
LNTQLLKLQD  TQAGDFLQLE  VKRAKQDGWP  AAVKDRLNGA  DVLDFALAIH  GAKTTEIDAT1200
ALTVRLPYEL  KAGERAHQLV  VYQVLENSKL  VIVKERKYDP  ATGYVSFQAK  VLGRYAVATV1260
KLPDQKGSKW  AAESIEALAA  RGILPLGAEA  SYEAGALMNR  AEFAQLLVNA  FDLQTAAGAP1320
DFKDVSKDSP  YAEAIGIAGA  LGIVKGRADG  LYSPSDTLSR  QEMALMIYRV  VQLQQIGLKS1380
DSPAVQGFKD  MNLLTGEASA  AVEKLRSAGV  IQGAQNGYFL  PKGRMTKEQA  AVVVYRIISL1440
NP1442

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help