CAZyme3D

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Entry ID

Information for CAZyme ID: QUI22752.1

Basic Information

GenBank IDQUI22752.1
FamilyGH52
Sequence Length709
UniProt IDA0A8J8SGV1(100,100)Download
Average pLDDT?94.31
CAZy50 ID37563
CAZy50 RepYes, QUI22752.1
Structure ClusterSC_GH52_clus2
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1348613
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyVallitaleaceae
GenusVallitalea
SpeciesVallitalea pronyensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHNNLFQSLH  SPIGAGAAFA  IGLEGTGGGF  MLENDYVPEQ  DIFIGYREEQ  CVSLLPFYKK60
GQKTGKESYT  QEEDSGEIKV  ESIAPDKISR  TFGYGTDTFR  TEDIEFSITS  RFNQLPDIEK120
HNPVAQGILS  GEYYEDIKRK  VLPVVVGKLV  IDNRLGDNDK  EGIFAISGNT  RKIFLQQETK180
GRYAGYRSAD  GYGFAVDNRG  GTITEISDFD  FPSLYRKTLP  ACLVLGPMSG  ILFQVPKGEK240
VEVDMVFGWF  KEHETTEGLH  RYKYLYTDYF  NSLLEVFDYG  FSQKDYLWVE  ALEADKKVLE300
SELTEDQKIL  VNQAAKSYYV  SSMLFSEGNQ  VRWVMNEGSF  LMMNTFDLII  DHMFFDLRYH360
GWVLRNQLAY  YVKEYSYYDQ  CGISFSHDQG  VRNLFAPQGH  SSYEIPNTKD  CFSYMTQEEL420
CNWIITASIY  VHQQQDIAFA  MDMKDVIKDS  LASMMKRDGD  EALLDGIMDV  DSSRCGTGAE480
ITTYDSLDES  LGQARRNIYM  AVKCFASYLG  LVSLIEAVLE  GIGEIDDQEA  GKREMFVEAF540
NQLRKQAEAQ  ALLGARTING  FVGEDGTFPA  IVKEGNETMI  IPIVEGVIYP  FYAGMDDWLL600
KQPETVALLN  HLRGHIDVIL  TKGKCLFDDG  GWKLSATSVN  SWMSKIFLCQ  HIVEKILDMD660
MDMREANKAH  VKWWIVNCPT  NPGIDQVFDG  HQEERGFHYP  RAVTNTLWW709

Predicted 3D structure by AlphaFold2 with pLDDT = 94.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHNNLFQSLH  SPIGAGAAFA  IGLEGTGGGF  MLENDYVPEQ  DIFIGYREEQ  CVSLLPFYKK60
GQKTGKESYT  QEEDSGEIKV  ESIAPDKISR  TFGYGTDTFR  TEDIEFSITS  RFNQLPDIEK120
HNPVAQGILS  GEYYEDIKRK  VLPVVVGKLV  IDNRLGDNDK  EGIFAISGNT  RKIFLQQETK180
GRYAGYRSAD  GYGFAVDNRG  GTITEISDFD  FPSLYRKTLP  ACLVLGPMSG  ILFQVPKGEK240
VEVDMVFGWF  KEHETTEGLH  RYKYLYTDYF  NSLLEVFDYG  FSQKDYLWVE  ALEADKKVLE300
SELTEDQKIL  VNQAAKSYYV  SSMLFSEGNQ  VRWVMNEGSF  LMMNTFDLII  DHMFFDLRYH360
GWVLRNQLAY  YVKEYSYYDQ  CGISFSHDQG  VRNLFAPQGH  SSYEIPNTKD  CFSYMTQEEL420
CNWIITASIY  VHQQQDIAFA  MDMKDVIKDS  LASMMKRDGD  EALLDGIMDV  DSSRCGTGAE480
ITTYDSLDES  LGQARRNIYM  AVKCFASYLG  LVSLIEAVLE  GIGEIDDQEA  GKREMFVEAF540
NQLRKQAEAQ  ALLGARTING  FVGEDGTFPA  IVKEGNETMI  IPIVEGVIYP  FYAGMDDWLL600
KQPETVALLN  HLRGHIDVIL  TKGKCLFDDG  GWKLSATSVN  SWMSKIFLCQ  HIVEKILDMD660
MDMREANKAH  VKWWIVNCPT  NPGIDQVFDG  HQEERGFHYP  RAVTNTLWW709

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH52(19-430)

MHNNLFQSLH  SPIGAGAAFA  IGLEGTGGGF  MLENDYVPEQ  DIFIGYREEQ  CVSLLPFYKK60
GQKTGKESYT  QEEDSGEIKV  ESIAPDKISR  TFGYGTDTFR  TEDIEFSITS  RFNQLPDIEK120
HNPVAQGILS  GEYYEDIKRK  VLPVVVGKLV  IDNRLGDNDK  EGIFAISGNT  RKIFLQQETK180
GRYAGYRSAD  GYGFAVDNRG  GTITEISDFD  FPSLYRKTLP  ACLVLGPMSG  ILFQVPKGEK240
VEVDMVFGWF  KEHETTEGLH  RYKYLYTDYF  NSLLEVFDYG  FSQKDYLWVE  ALEADKKVLE300
SELTEDQKIL  VNQAAKSYYV  SSMLFSEGNQ  VRWVMNEGSF  LMMNTFDLII  DHMFFDLRYH360
GWVLRNQLAY  YVKEYSYYDQ  CGISFSHDQG  VRNLFAPQGH  SSYEIPNTKD  CFSYMTQEEL420
CNWIITASIY  VHQQQDIAFA  MDMKDVIKDS  LASMMKRDGD  EALLDGIMDV  DSSRCGTGAE480
ITTYDSLDES  LGQARRNIYM  AVKCFASYLG  LVSLIEAVLE  GIGEIDDQEA  GKREMFVEAF540
NQLRKQAEAQ  ALLGARTING  FVGEDGTFPA  IVKEGNETMI  IPIVEGVIYP  FYAGMDDWLL600
KQPETVALLN  HLRGHIDVIL  TKGKCLFDDG  GWKLSATSVN  SWMSKIFLCQ  HIVEKILDMD660
MDMREANKAH  VKWWIVNCPT  NPGIDQVFDG  HQEERGFHYP  RAVTNTLWW709

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help