CAZyme3D

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Entry ID

Information for CAZyme ID: QTX31905.1

Basic Information

GenBank IDQTX31905.1
FamilyGT4
Sequence Length415
UniProt IDA0A9Q7A6L7(100,100)Download
Average pLDDT?95.76
CAZy50 ID91391
CAZy50 RepYes, QTX31905.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3029084
KingdomBacteria
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilyAminithiophilaceae
GenusAminithiophilus
SpeciesAminithiophilus ramosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKILYLHQYF  NTPAMAGGTR  SYEMGRRLVA  WGHEVHMITT  DRDGRFPKDK  IWHETEEAGI60
HVHWTPVPYG  NAMPYNERIK  AFFAFSWRAA  RRAVAIGGDI  VFATSTPLTI  AIPGVYASKR120
LGIPMVFEVR  DLWPEVPIAL  GALRNPVTIK  TARALERFAY  KNSSKIVALS  PGMKDGIVKT180
GYPAEHVAVI  PNGSDVEFFD  VLSSVGEELR  RKTPWLGDRK  LVVYIGTLGK  VNNVSYLVDV240
AVEMAKLDPK  IAFLVIGDGQ  EKKYIKDKAI  NSGVFNDNFY  MMDPIPKNEV  PKWMSAASVA300
TSFVDQVKEL  EINSANKFFD  TLAAGKPIAI  NYGGWQADII  DKYRNGCQLD  PNDTFGAAKI360
LFYFINNENQ  LLAASMASKK  VARELFDRNM  LAKQFESLLV  QAKNVYLNSK  RERIQ415

Predicted 3D structure by AlphaFold2 with pLDDT = 95.76 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKILYLHQYF  NTPAMAGGTR  SYEMGRRLVA  WGHEVHMITT  DRDGRFPKDK  IWHETEEAGI60
HVHWTPVPYG  NAMPYNERIK  AFFAFSWRAA  RRAVAIGGDI  VFATSTPLTI  AIPGVYASKR120
LGIPMVFEVR  DLWPEVPIAL  GALRNPVTIK  TARALERFAY  KNSSKIVALS  PGMKDGIVKT180
GYPAEHVAVI  PNGSDVEFFD  VLSSVGEELR  RKTPWLGDRK  LVVYIGTLGK  VNNVSYLVDV240
AVEMAKLDPK  IAFLVIGDGQ  EKKYIKDKAI  NSGVFNDNFY  MMDPIPKNEV  PKWMSAASVA300
TSFVDQVKEL  EINSANKFFD  TLAAGKPIAI  NYGGWQADII  DKYRNGCQLD  PNDTFGAAKI360
LFYFINNENQ  LLAASMASKK  VARELFDRNM  LAKQFESLLV  QAKNVYLNSK  RERIQ415

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(218-370)

MKILYLHQYF  NTPAMAGGTR  SYEMGRRLVA  WGHEVHMITT  DRDGRFPKDK  IWHETEEAGI60
HVHWTPVPYG  NAMPYNERIK  AFFAFSWRAA  RRAVAIGGDI  VFATSTPLTI  AIPGVYASKR120
LGIPMVFEVR  DLWPEVPIAL  GALRNPVTIK  TARALERFAY  KNSSKIVALS  PGMKDGIVKT180
GYPAEHVAVI  PNGSDVEFFD  VLSSVGEELR  RKTPWLGDRK  LVVYIGTLGK  VNNVSYLVDV240
AVEMAKLDPK  IAFLVIGDGQ  EKKYIKDKAI  NSGVFNDNFY  MMDPIPKNEV  PKWMSAASVA300
TSFVDQVKEL  EINSANKFFD  TLAAGKPIAI  NYGGWQADII  DKYRNGCQLD  PNDTFGAAKI360
LFYFINNENQ  LLAASMASKK  VARELFDRNM  LAKQFESLLV  QAKNVYLNSK  RERIQ415

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help