CAZyme3D

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Entry ID

Information for CAZyme ID: QTU84139.1

Basic Information

GenBank IDQTU84139.1
FamilyGH5_2
Sequence Length501
UniProt IDA0A9E6MQL7(100,100)Download
Average pLDDT?92.56
CAZy50 ID68655
CAZy50 RepYes, QTU84139.1
Structure ClusterSC_GH5_clus299
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2682776
KingdomBacteria
PhylumActinomycetota
ClassCoriobacteriia
OrderEggerthellales
FamilyEggerthellaceae
GenusXiamenia
SpeciesXiamenia xianingshaonis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLAFVLMTG  CVAAAGATAA  VAASADPQPA  HAAEQGWKKS  RGSWWYQYAD  GSYARGWKAI60
DGAWYRFDRA  GWMQTGWTRD  GGRWFYLGKS  GAMATGWKRV  SGTWYYFSTS  GVMQTGWQQI120
GGTWYYFAPS  GAMQTGWQKV  SGKWYYLEPS  GAMRTSAWVG  NTYYVQANGA  MAANCWVDGG180
RYYVDGSGRW  VPGKKKPVVP  LYSQAGRLRV  DGTHLVGENG  KTVQLRGVST  HGLAWFPQYV240
SKPAFQTLRD  DWGANVVRLA  LYTAEYGGYC  TGGDKAQLEA  LIDKGVKAAS  DLGMYVIIDW300
HILSDGNPQT  YQSQAVDFFG  RMAAKYKGYG  NVIYEICNEP  QNSPFASVIK  PYANKVLKAI360
RASDKKAVVL  VGTNTWSQDV  DEVIGNRLAD  PNVMYTLHFY  AATHQQWNRD  KLKRALDAGV420
PVFVSECSIT  DASGNGAIDR  ASANAWLKLM  NDNAVSYVAW  SLCNKNESSA  LVSPASNALS480
GWSRGQLSET  GKWWRNAIAN  S501

Predicted 3D structure by AlphaFold2 with pLDDT = 92.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLLAFVLMTG  CVAAAGATAA  VAASADPQPA  HAAEQGWKKS  RGSWWYQYAD  GSYARGWKAI60
DGAWYRFDRA  GWMQTGWTRD  GGRWFYLGKS  GAMATGWKRV  SGTWYYFSTS  GVMQTGWQQI120
GGTWYYFAPS  GAMQTGWQKV  SGKWYYLEPS  GAMRTSAWVG  NTYYVQANGA  MAANCWVDGG180
RYYVDGSGRW  VPGKKKPVVP  LYSQAGRLRV  DGTHLVGENG  KTVQLRGVST  HGLAWFPQYV240
SKPAFQTLRD  DWGANVVRLA  LYTAEYGGYC  TGGDKAQLEA  LIDKGVKAAS  DLGMYVIIDW300
HILSDGNPQT  YQSQAVDFFG  RMAAKYKGYG  NVIYEICNEP  QNSPFASVIK  PYANKVLKAI360
RASDKKAVVL  VGTNTWSQDV  DEVIGNRLAD  PNVMYTLHFY  AATHQQWNRD  KLKRALDAGV420
PVFVSECSIT  DASGNGAIDR  ASANAWLKLM  NDNAVSYVAW  SLCNKNESSA  LVSPASNALS480
GWSRGQLSET  GKWWRNAIAN  S501

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_2(218-458)

MLLAFVLMTG  CVAAAGATAA  VAASADPQPA  HAAEQGWKKS  RGSWWYQYAD  GSYARGWKAI60
DGAWYRFDRA  GWMQTGWTRD  GGRWFYLGKS  GAMATGWKRV  SGTWYYFSTS  GVMQTGWQQI120
GGTWYYFAPS  GAMQTGWQKV  SGKWYYLEPS  GAMRTSAWVG  NTYYVQANGA  MAANCWVDGG180
RYYVDGSGRW  VPGKKKPVVP  LYSQAGRLRV  DGTHLVGENG  KTVQLRGVST  HGLAWFPQYV240
SKPAFQTLRD  DWGANVVRLA  LYTAEYGGYC  TGGDKAQLEA  LIDKGVKAAS  DLGMYVIIDW300
HILSDGNPQT  YQSQAVDFFG  RMAAKYKGYG  NVIYEICNEP  QNSPFASVIK  PYANKVLKAI360
RASDKKAVVL  VGTNTWSQDV  DEVIGNRLAD  PNVMYTLHFY  AATHQQWNRD  KLKRALDAGV420
PVFVSECSIT  DASGNGAIDR  ASANAWLKLM  NDNAVSYVAW  SLCNKNESSA  LVSPASNALS480
GWSRGQLSET  GKWWRNAIAN  S501

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help