CAZyme3D

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Entry ID

Information for CAZyme ID: QTD51374.1

Basic Information

GenBank IDQTD51374.1
FamilyGT101
Sequence Length723
UniProt IDA0A8A4TQB2(100,100)Download
Average pLDDT?73.95
CAZy50 ID35906
CAZy50 RepYes, QTD51374.1
Structure ClusterSC_GT101_clus17
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2818388
KingdomBacteria
PhylumAcidobacteriota
ClassHolophagae
OrderAcanthopleuribacterales
FamilyAcanthopleuribacteraceae
GenusSulfidibacter
SpeciesSulfidibacter corallicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRFVNEWDTL  DVLAEARAIC  RFGDGELKYA  LMKQPIVAQR  MDETLHLRLR  QVLANDQPGV60
LVGIPPIYTE  LSKLNLDWIN  FYMWRELRDK  TNPYFRGSSA  TWYSSFITRP  EGIVGLMSDD120
YFDRFKELWA  DKHLIFVGNM  RHVRQPGWHL  HFLSPTELEH  HELFDNAASV  TVIPTPRKNA180
WDQYDALLSE  CREQAKNSAD  KDCLFLLSVG  PTATVMAWDL  ARAGLRAFDF  GQLPMIYDLF240
RHGGQPKHVH  LQKWGERRHQ  ASGPVLDVVV  TSPDREALIA  LSQLLEGFRI  DRTTRLELDA300
ATLEKAAKVG  SSLPLLKPDA  EVLSVAWLLP  GLVPAEGPFA  TILMSRHPFE  VISHWFHTEL360
HRTPLFEALQ  ARSPSLRHWD  DPLHQLTAFF  VLWHQQLRDS  LTTSSRFFRF  RMEDPIGDWA420
DQLSVWGHRG  NPDLSKLHLP  DLPFEKVRDV  SAALKSDTLR  EAFTGLIEWL  GYAPDLALTA480
AGRSMALKER  GITPLPGFQR  QDLINQVIEP  ELQGALVFDI  GANQGNMTRV  YTAAGARVVA540
VEPLEHLTCN  NENFGPQVIV  ENVCVADREG  HIDFYQCEVE  ASSSCSLEWQ  DGLLRDEREW600
SKAIVKPCLT  LDTLIERHGL  PTYIKVDVEN  LEGLVLSGLH  QPVELLSFEY  TGGYSENFKT660
CLAQIERLGF  SELIAFEKNK  IGNRKFARLV  QLRDIEAAHQ  YFEGLPRFQQ  GDFLVVNRSP720
SRP723

Predicted 3D structure by AlphaFold2 with pLDDT = 73.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRFVNEWDTL  DVLAEARAIC  RFGDGELKYA  LMKQPIVAQR  MDETLHLRLR  QVLANDQPGV60
LVGIPPIYTE  LSKLNLDWIN  FYMWRELRDK  TNPYFRGSSA  TWYSSFITRP  EGIVGLMSDD120
YFDRFKELWA  DKHLIFVGNM  RHVRQPGWHL  HFLSPTELEH  HELFDNAASV  TVIPTPRKNA180
WDQYDALLSE  CREQAKNSAD  KDCLFLLSVG  PTATVMAWDL  ARAGLRAFDF  GQLPMIYDLF240
RHGGQPKHVH  LQKWGERRHQ  ASGPVLDVVV  TSPDREALIA  LSQLLEGFRI  DRTTRLELDA300
ATLEKAAKVG  SSLPLLKPDA  EVLSVAWLLP  GLVPAEGPFA  TILMSRHPFE  VISHWFHTEL360
HRTPLFEALQ  ARSPSLRHWD  DPLHQLTAFF  VLWHQQLRDS  LTTSSRFFRF  RMEDPIGDWA420
DQLSVWGHRG  NPDLSKLHLP  DLPFEKVRDV  SAALKSDTLR  EAFTGLIEWL  GYAPDLALTA480
AGRSMALKER  GITPLPGFQR  QDLINQVIEP  ELQGALVFDI  GANQGNMTRV  YTAAGARVVA540
VEPLEHLTCN  NENFGPQVIV  ENVCVADREG  HIDFYQCEVE  ASSSCSLEWQ  DGLLRDEREW600
SKAIVKPCLT  LDTLIERHGL  PTYIKVDVEN  LEGLVLSGLH  QPVELLSFEY  TGGYSENFKT660
CLAQIERLGF  SELIAFEKNK  IGNRKFARLV  QLRDIEAAHQ  YFEGLPRFQQ  GDFLVVNRSP720
SRP723

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT101(19-252)

MRFVNEWDTL  DVLAEARAIC  RFGDGELKYA  LMKQPIVAQR  MDETLHLRLR  QVLANDQPGV60
LVGIPPIYTE  LSKLNLDWIN  FYMWRELRDK  TNPYFRGSSA  TWYSSFITRP  EGIVGLMSDD120
YFDRFKELWA  DKHLIFVGNM  RHVRQPGWHL  HFLSPTELEH  HELFDNAASV  TVIPTPRKNA180
WDQYDALLSE  CREQAKNSAD  KDCLFLLSVG  PTATVMAWDL  ARAGLRAFDF  GQLPMIYDLF240
RHGGQPKHVH  LQKWGERRHQ  ASGPVLDVVV  TSPDREALIA  LSQLLEGFRI  DRTTRLELDA300
ATLEKAAKVG  SSLPLLKPDA  EVLSVAWLLP  GLVPAEGPFA  TILMSRHPFE  VISHWFHTEL360
HRTPLFEALQ  ARSPSLRHWD  DPLHQLTAFF  VLWHQQLRDS  LTTSSRFFRF  RMEDPIGDWA420
DQLSVWGHRG  NPDLSKLHLP  DLPFEKVRDV  SAALKSDTLR  EAFTGLIEWL  GYAPDLALTA480
AGRSMALKER  GITPLPGFQR  QDLINQVIEP  ELQGALVFDI  GANQGNMTRV  YTAAGARVVA540
VEPLEHLTCN  NENFGPQVIV  ENVCVADREG  HIDFYQCEVE  ASSSCSLEWQ  DGLLRDEREW600
SKAIVKPCLT  LDTLIERHGL  PTYIKVDVEN  LEGLVLSGLH  QPVELLSFEY  TGGYSENFKT660
CLAQIERLGF  SELIAFEKNK  IGNRKFARLV  QLRDIEAAHQ  YFEGLPRFQQ  GDFLVVNRSP720
SRP723

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help