CAZyme3D

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Entry ID

Information for CAZyme ID: QTA38527.1

Basic Information

GenBank IDQTA38527.1
FamilyGT4
Sequence Length405
UniProt IDQTA38527.1(MOD)Download
Average pLDDT?92.24
CAZy50 ID96391
CAZy50 RepYes, QTA38527.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2571116
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyFervidobacteriaceae
GenusThermosipho
SpeciesThermosipho ferrireducens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNIAILNHYA  STPDQSSGEI  RHFELAKRFA  KDGNQIHIYI  GDYSHLVGDY  WHNIKGMLFE60
EESVKFKVIK  TRKYTKNSLK  RFLSSYDYYK  NGKKIITNEK  YDVIIASSPH  PFTWSLAYYY120
SKKLKTPFYI  EIRDVWPDDL  VSLGSLSYSH  PIAKVFDYMC  KKYYPEAAGI  ISLIPDLSFH180
FKRLNTKVKN  YIYIPNGIDT  KFFEKIIKCQ  SVDKIIQNIP  KNTIKIAFIG  SMVEHNGVKE240
TIELIINVAP  ELSKNFSFIF  VGPGQEDYIN  SLKSLAKNSR  NIFFFEPIPK  KCVPHLMQNV300
DVLLFTLSEN  QMNSPAISSF  KLLDYMASGK  PILSVDIEGL  LFKKTNGAIF  FKNGNQKSFE360
KALSKLLKTN  LNEIGKRNKE  FIQKKRNWDR  LYNELSNFIR  NTINQ405

Predicted 3D structure by AlphaFold2 with pLDDT = 92.24 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNIAILNHYA  STPDQSSGEI  RHFELAKRFA  KDGNQIHIYI  GDYSHLVGDY  WHNIKGMLFE60
EESVKFKVIK  TRKYTKNSLK  RFLSSYDYYK  NGKKIITNEK  YDVIIASSPH  PFTWSLAYYY120
SKKLKTPFYI  EIRDVWPDDL  VSLGSLSYSH  PIAKVFDYMC  KKYYPEAAGI  ISLIPDLSFH180
FKRLNTKVKN  YIYIPNGIDT  KFFEKIIKCQ  SVDKIIQNIP  KNTIKIAFIG  SMVEHNGVKE240
TIELIINVAP  ELSKNFSFIF  VGPGQEDYIN  SLKSLAKNSR  NIFFFEPIPK  KCVPHLMQNV300
DVLLFTLSEN  QMNSPAISSF  KLLDYMASGK  PILSVDIEGL  LFKKTNGAIF  FKNGNQKSFE360
KALSKLLKTN  LNEIGKRNKE  FIQKKRNWDR  LYNELSNFIR  NTINQ405

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(218-369)

MNIAILNHYA  STPDQSSGEI  RHFELAKRFA  KDGNQIHIYI  GDYSHLVGDY  WHNIKGMLFE60
EESVKFKVIK  TRKYTKNSLK  RFLSSYDYYK  NGKKIITNEK  YDVIIASSPH  PFTWSLAYYY120
SKKLKTPFYI  EIRDVWPDDL  VSLGSLSYSH  PIAKVFDYMC  KKYYPEAAGI  ISLIPDLSFH180
FKRLNTKVKN  YIYIPNGIDT  KFFEKIIKCQ  SVDKIIQNIP  KNTIKIAFIG  SMVEHNGVKE240
TIELIINVAP  ELSKNFSFIF  VGPGQEDYIN  SLKSLAKNSR  NIFFFEPIPK  KCVPHLMQNV300
DVLLFTLSEN  QMNSPAISSF  KLLDYMASGK  PILSVDIEGL  LFKKTNGAIF  FKNGNQKSFE360
KALSKLLKTN  LNEIGKRNKE  FIQKKRNWDR  LYNELSNFIR  NTINQ405

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help