CAZyme3D

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Entry ID

Information for CAZyme ID: QSS66299.1

Basic Information

GenBank IDQSS66299.1
FamilyGH5_9
Sequence Length948
UniProt IDA0A8A1MK89(100,100)Download
Average pLDDT?69.69
CAZy50 ID16736
CAZy50 RepYes, QSS66299.1
Structure ClusterSC_GH5_clus209
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5037
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderOnygenales
FamilyAjellomycetaceae
GenusHistoplasma
SpeciesHistoplasma capsulatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPHHSRERER  GEYRSRDRDR  RQYHYEQANT  HDRHEYTSHT  YDDYGNDIQD  SDDGADDALF60
NDRRRSRQSR  RNSSSHPQAR  PSPARRTQLN  PSQRTQQPQQ  RTRRQDHSYD  PDDDDGDDSE120
SAVIVVDSRP  NISRPAHVRP  SPVRVERRRS  KSRTVENTHN  TGIRDSRYKS  KESPATSPIK180
KRDRDRDREG  RRRRDSMADE  ESPRKGRLRD  RRRKGLNDDD  EENDVRGGFG  TDRDRDKRRR240
KEKEKYLPRE  SGAWNKQSKH  ASTDSANSAT  QLLSVDALAK  LNAAQIKAEA  VEKAKAAKDE300
KALLEKERKR  RKREEAREKE  RRIPVQKGAK  SKGWAGRRLV  SGAFLEEGRS  PELKTRGGGG360
RGVRKDEKGR  KGAAGGGGGD  DDKGGGWFAS  WSKKKKLWVT  AGVLALLLII  IIPVAAVLSK420
NKKGDQGASG  DSGDGPSDPA  SQGPPPRTEL  GNFDPNTLPE  SAKKTYFDPR  TWYDTADMNV480
TYTDETVGGL  PIMGLNSTWD  DSAQANKNVP  PLNKKFPYGK  QPIRGVNVGG  WLSLEPFITP540
SFFSNYNFRD  NVVDEYTLSK  KLAPNAAQYI  EKHYATFINE  QSFREIRDAG  LDHVRIPYSY600
WLVKTYDDDP  YVERIGWRYL  LRAIEYCRKY  GLRVNLDLHG  VQGSQNGWNH  SGRQGSIRWL660
EDDDGTKNGD  RSLETHKMLA  TFFAQERYKN  VVTIYGLANE  PMMLKLDIEA  VINWNTKAIS720
IIRESGLKDA  KIAFGDGFLN  LEKWKTIMQD  VDDNLLLDTH  QYTVFNTGQV  GLPHRKKLDF780
VCEAWVNLIT  KSNTKGTGWG  PTICGEWSQA  DTDCAKYLNN  VNVGSRWLGT  MDNPQAKDQV840
LQAHCPTQWP  QNDPAVNGPP  CSCDQANADP  SNYSDSYKKY  LQMYAEAQMY  AFEKGYGWFY900
WTWQTESAAQ  WSYKKGLDAG  ILPKKAYEPE  FKCENDKLGS  FGDLEEYY948

Predicted 3D structure by AlphaFold2 with pLDDT = 69.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPHHSRERER  GEYRSRDRDR  RQYHYEQANT  HDRHEYTSHT  YDDYGNDIQD  SDDGADDALF60
NDRRRSRQSR  RNSSSHPQAR  PSPARRTQLN  PSQRTQQPQQ  RTRRQDHSYD  PDDDDGDDSE120
SAVIVVDSRP  NISRPAHVRP  SPVRVERRRS  KSRTVENTHN  TGIRDSRYKS  KESPATSPIK180
KRDRDRDREG  RRRRDSMADE  ESPRKGRLRD  RRRKGLNDDD  EENDVRGGFG  TDRDRDKRRR240
KEKEKYLPRE  SGAWNKQSKH  ASTDSANSAT  QLLSVDALAK  LNAAQIKAEA  VEKAKAAKDE300
KALLEKERKR  RKREEAREKE  RRIPVQKGAK  SKGWAGRRLV  SGAFLEEGRS  PELKTRGGGG360
RGVRKDEKGR  KGAAGGGGGD  DDKGGGWFAS  WSKKKKLWVT  AGVLALLLII  IIPVAAVLSK420
NKKGDQGASG  DSGDGPSDPA  SQGPPPRTEL  GNFDPNTLPE  SAKKTYFDPR  TWYDTADMNV480
TYTDETVGGL  PIMGLNSTWD  DSAQANKNVP  PLNKKFPYGK  QPIRGVNVGG  WLSLEPFITP540
SFFSNYNFRD  NVVDEYTLSK  KLAPNAAQYI  EKHYATFINE  QSFREIRDAG  LDHVRIPYSY600
WLVKTYDDDP  YVERIGWRYL  LRAIEYCRKY  GLRVNLDLHG  VQGSQNGWNH  SGRQGSIRWL660
EDDDGTKNGD  RSLETHKMLA  TFFAQERYKN  VVTIYGLANE  PMMLKLDIEA  VINWNTKAIS720
IIRESGLKDA  KIAFGDGFLN  LEKWKTIMQD  VDDNLLLDTH  QYTVFNTGQV  GLPHRKKLDF780
VCEAWVNLIT  KSNTKGTGWG  PTICGEWSQA  DTDCAKYLNN  VNVGSRWLGT  MDNPQAKDQV840
LQAHCPTQWP  QNDPAVNGPP  CSCDQANADP  SNYSDSYKKY  LQMYAEAQMY  AFEKGYGWFY900
WTWQTESAAQ  WSYKKGLDAG  ILPKKAYEPE  FKCENDKLGS  FGDLEEYY948

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_9(572-906)

MPHHSRERER  GEYRSRDRDR  RQYHYEQANT  HDRHEYTSHT  YDDYGNDIQD  SDDGADDALF60
NDRRRSRQSR  RNSSSHPQAR  PSPARRTQLN  PSQRTQQPQQ  RTRRQDHSYD  PDDDDGDDSE120
SAVIVVDSRP  NISRPAHVRP  SPVRVERRRS  KSRTVENTHN  TGIRDSRYKS  KESPATSPIK180
KRDRDRDREG  RRRRDSMADE  ESPRKGRLRD  RRRKGLNDDD  EENDVRGGFG  TDRDRDKRRR240
KEKEKYLPRE  SGAWNKQSKH  ASTDSANSAT  QLLSVDALAK  LNAAQIKAEA  VEKAKAAKDE300
KALLEKERKR  RKREEAREKE  RRIPVQKGAK  SKGWAGRRLV  SGAFLEEGRS  PELKTRGGGG360
RGVRKDEKGR  KGAAGGGGGD  DDKGGGWFAS  WSKKKKLWVT  AGVLALLLII  IIPVAAVLSK420
NKKGDQGASG  DSGDGPSDPA  SQGPPPRTEL  GNFDPNTLPE  SAKKTYFDPR  TWYDTADMNV480
TYTDETVGGL  PIMGLNSTWD  DSAQANKNVP  PLNKKFPYGK  QPIRGVNVGG  WLSLEPFITP540
SFFSNYNFRD  NVVDEYTLSK  KLAPNAAQYI  EKHYATFINE  QSFREIRDAG  LDHVRIPYSY600
WLVKTYDDDP  YVERIGWRYL  LRAIEYCRKY  GLRVNLDLHG  VQGSQNGWNH  SGRQGSIRWL660
EDDDGTKNGD  RSLETHKMLA  TFFAQERYKN  VVTIYGLANE  PMMLKLDIEA  VINWNTKAIS720
IIRESGLKDA  KIAFGDGFLN  LEKWKTIMQD  VDDNLLLDTH  QYTVFNTGQV  GLPHRKKLDF780
VCEAWVNLIT  KSNTKGTGWG  PTICGEWSQA  DTDCAKYLNN  VNVGSRWLGT  MDNPQAKDQV840
LQAHCPTQWP  QNDPAVNGPP  CSCDQANADP  SNYSDSYKKY  LQMYAEAQMY  AFEKGYGWFY900
WTWQTESAAQ  WSYKKGLDAG  ILPKKAYEPE  FKCENDKLGS  FGDLEEYY948

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help