CAZyme3D

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Entry ID

Information for CAZyme ID: QSS64539.1

Basic Information

GenBank IDQSS64539.1
FamilyAA3_2
Sequence Length452
UniProt IDA0A8A1MF33(100,100)Download
Average pLDDT?81.48
CAZy50 ID79547
CAZy50 RepYes, QSS64539.1
Structure ClusterSC_AA3_clus95
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5037
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderOnygenales
FamilyAjellomycetaceae
GenusHistoplasma
SpeciesHistoplasma capsulatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAPAFDFIVV  ARLAALLHLG  LVRARANPTA  LLLEAGDNLE  DRNLRVDGQR  WLTFQNKNMN60
WGYQTVPQEY  CNNSELDYSR  GRGVGGSSAI  NFGVYSLGAR  DDYDKWAKIV  GDDAFNWDHI120
HARFKELETF  HGEVPAGVDK  KYAVPKAADH  GTTGPLHVGN  AAEWEKDLVP  TLDIFEQAGF180
PLNPDHNSGN  PIGMSVLINS  AHKGLRSTAK  DLLQRQAQNL  TIMANSPVQR  LLIEDKKAVS240
ALEQWKRDAT  GPWSKFSCEC  GIGWFKIDGL  TQTKEFEDLP  SEEQEYLQEV  TVPHFEIFTH300
FPIHWPVARL  HCNLRIQTSL  CAWIQNSSPT  PLIVVLQLIS  LRDAFRIAKH  PAYIKDKLAE360
LAAPKSNSDE  DLLEYWKQNI  SSSWHIICTA  KMGKARDADA  VVDCDYRVMG  IDGLRVADMR420
VIPVLVSGHI  QAAEYVTGDA  CAEKLIKEYN  LA452

Predicted 3D structure by AlphaFold2 with pLDDT = 81.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAPAFDFIVV  ARLAALLHLG  LVRARANPTA  LLLEAGDNLE  DRNLRVDGQR  WLTFQNKNMN60
WGYQTVPQEY  CNNSELDYSR  GRGVGGSSAI  NFGVYSLGAR  DDYDKWAKIV  GDDAFNWDHI120
HARFKELETF  HGEVPAGVDK  KYAVPKAADH  GTTGPLHVGN  AAEWEKDLVP  TLDIFEQAGF180
PLNPDHNSGN  PIGMSVLINS  AHKGLRSTAK  DLLQRQAQNL  TIMANSPVQR  LLIEDKKAVS240
ALEQWKRDAT  GPWSKFSCEC  GIGWFKIDGL  TQTKEFEDLP  SEEQEYLQEV  TVPHFEIFTH300
FPIHWPVARL  HCNLRIQTSL  CAWIQNSSPT  PLIVVLQLIS  LRDAFRIAKH  PAYIKDKLAE360
LAAPKSNSDE  DLLEYWKQNI  SSSWHIICTA  KMGKARDADA  VVDCDYRVMG  IDGLRVADMR420
VIPVLVSGHI  QAAEYVTGDA  CAEKLIKEYN  LA452

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(25-237)

MAPAFDFIVV  ARLAALLHLG  LVRARANPTA  LLLEAGDNLE  DRNLRVDGQR  WLTFQNKNMN60
WGYQTVPQEY  CNNSELDYSR  GRGVGGSSAI  NFGVYSLGAR  DDYDKWAKIV  GDDAFNWDHI120
HARFKELETF  HGEVPAGVDK  KYAVPKAADH  GTTGPLHVGN  AAEWEKDLVP  TLDIFEQAGF180
PLNPDHNSGN  PIGMSVLINS  AHKGLRSTAK  DLLQRQAQNL  TIMANSPVQR  LLIEDKKAVS240
ALEQWKRDAT  GPWSKFSCEC  GIGWFKIDGL  TQTKEFEDLP  SEEQEYLQEV  TVPHFEIFTH300
FPIHWPVARL  HCNLRIQTSL  CAWIQNSSPT  PLIVVLQLIS  LRDAFRIAKH  PAYIKDKLAE360
LAAPKSNSDE  DLLEYWKQNI  SSSWHIICTA  KMGKARDADA  VVDCDYRVMG  IDGLRVADMR420
VIPVLVSGHI  QAAEYVTGDA  CAEKLIKEYN  LA452

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help