CAZyme3D

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Entry ID

Information for CAZyme ID: QSQ20098.1

Basic Information

GenBank IDQSQ20098.1
FamilyGH5
Sequence Length908
UniProt IDQSQ20098.1(MOD)Download
Average pLDDT?89.17
CAZy50 ID18894
CAZy50 RepYes, QSQ20098.1
Structure ClusterSC_GH5_clus139
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2813578
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyMyxococcaceae
GenusPyxidicoccus
SpeciesPyxidicoccus parkwaysis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVLLQTRLNA  LPSARPLLDV  DGDFGPKTLQ  RVKEFQASGF  VNGVVDAGTW  SKLLDAPPAP60
RETFFVDGRH  LHDPNGNRVV  LRGINLPLLD  DWSFPPGNRL  ADLEKTGSNA  VRIQWYIDYG120
NPNRPGYASA  DLDAFLTQCK  TNRMIPILGL  WDVTCDADPT  LVNTKLIPWW  ISDEIVSILN180
KHRRYLIINL  ANELGFYRWS  GAPAVALDAF  KSAHEMAITS  IREKLHMPVM  LDAPDCGTSI240
DAWLSIGQEL  IDHDPDHNLL  LSVHAYWADY  DGMPHINSTV  NANLPIVFGE  VANKQGETIN300
NVTHDCFYDL  DGLNQNHPPN  FGFTYQSLLQ  TLKTQEIGWL  AWSWGPDSCQ  SRNIGQYAQD360
SNQFEGLSEP  FGNDIVNNPD  YGLKASAERS  SVFARDGDIT  PSANSMTTAE  GGIRHDPEGF420
APARKVNLLT  WKDARNADRT  LHLGAYLYQY  DFSFDDGQRV  ITRSANDDAH  GHPGFGYVVS480
HSPTGNSPLG  KVCPPSNVET  TVFLGGHHAI  HRVELVYDRD  QEGGGFGIQI  PVVIEWFVAT540
GRDHPVWAVT  WKMGEAANPQ  NRDFDDYLMD  VRGPYGSLNF  DGAASRNQGD  AIGGVAWGDF600
GLKFTTTDAQ  LTLNSPWTYN  TPNTVCFTQA  WTANENAEMG  IVQTRVADKE  MGYPGRVVGR660
ERGHTSAEDH  PDKGDCTDFG  PDNRNYSVPC  VNGWPYQLMN  SDWDPDSGKP  AAEATGTKLL720
AWGSPIGWLG  ASGFELFDGS  ASADGRGDRS  YATFIVLGPR  FRFDQGGEPA  GDVAITIKMV780
EALNAATISD  VQPGSLVTQV  ARGPGASQLK  NITHGYNDTY  AAYYLSASDN  QVAFSFTPAI840
GTAVKNPIFV  IQNYTTQRLP  SITVDGNPVS  VNTGADAGAF  VSLNPATSEL  WVTLNATIQA900
PMGVQIMI908

Predicted 3D structure by AlphaFold2 with pLDDT = 89.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVLLQTRLNA  LPSARPLLDV  DGDFGPKTLQ  RVKEFQASGF  VNGVVDAGTW  SKLLDAPPAP60
RETFFVDGRH  LHDPNGNRVV  LRGINLPLLD  DWSFPPGNRL  ADLEKTGSNA  VRIQWYIDYG120
NPNRPGYASA  DLDAFLTQCK  TNRMIPILGL  WDVTCDADPT  LVNTKLIPWW  ISDEIVSILN180
KHRRYLIINL  ANELGFYRWS  GAPAVALDAF  KSAHEMAITS  IREKLHMPVM  LDAPDCGTSI240
DAWLSIGQEL  IDHDPDHNLL  LSVHAYWADY  DGMPHINSTV  NANLPIVFGE  VANKQGETIN300
NVTHDCFYDL  DGLNQNHPPN  FGFTYQSLLQ  TLKTQEIGWL  AWSWGPDSCQ  SRNIGQYAQD360
SNQFEGLSEP  FGNDIVNNPD  YGLKASAERS  SVFARDGDIT  PSANSMTTAE  GGIRHDPEGF420
APARKVNLLT  WKDARNADRT  LHLGAYLYQY  DFSFDDGQRV  ITRSANDDAH  GHPGFGYVVS480
HSPTGNSPLG  KVCPPSNVET  TVFLGGHHAI  HRVELVYDRD  QEGGGFGIQI  PVVIEWFVAT540
GRDHPVWAVT  WKMGEAANPQ  NRDFDDYLMD  VRGPYGSLNF  DGAASRNQGD  AIGGVAWGDF600
GLKFTTTDAQ  LTLNSPWTYN  TPNTVCFTQA  WTANENAEMG  IVQTRVADKE  MGYPGRVVGR660
ERGHTSAEDH  PDKGDCTDFG  PDNRNYSVPC  VNGWPYQLMN  SDWDPDSGKP  AAEATGTKLL720
AWGSPIGWLG  ASGFELFDGS  ASADGRGDRS  YATFIVLGPR  FRFDQGGEPA  GDVAITIKMV780
EALNAATISD  VQPGSLVTQV  ARGPGASQLK  NITHGYNDTY  AAYYLSASDN  QVAFSFTPAI840
GTAVKNPIFV  IQNYTTQRLP  SITVDGNPVS  VNTGADAGAF  VSLNPATSEL  WVTLNATIQA900
PMGVQIMI908

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_55(71-347)

MVLLQTRLNA  LPSARPLLDV  DGDFGPKTLQ  RVKEFQASGF  VNGVVDAGTW  SKLLDAPPAP60
RETFFVDGRH  LHDPNGNRVV  LRGINLPLLD  DWSFPPGNRL  ADLEKTGSNA  VRIQWYIDYG120
NPNRPGYASA  DLDAFLTQCK  TNRMIPILGL  WDVTCDADPT  LVNTKLIPWW  ISDEIVSILN180
KHRRYLIINL  ANELGFYRWS  GAPAVALDAF  KSAHEMAITS  IREKLHMPVM  LDAPDCGTSI240
DAWLSIGQEL  IDHDPDHNLL  LSVHAYWADY  DGMPHINSTV  NANLPIVFGE  VANKQGETIN300
NVTHDCFYDL  DGLNQNHPPN  FGFTYQSLLQ  TLKTQEIGWL  AWSWGPDSCQ  SRNIGQYAQD360
SNQFEGLSEP  FGNDIVNNPD  YGLKASAERS  SVFARDGDIT  PSANSMTTAE  GGIRHDPEGF420
APARKVNLLT  WKDARNADRT  LHLGAYLYQY  DFSFDDGQRV  ITRSANDDAH  GHPGFGYVVS480
HSPTGNSPLG  KVCPPSNVET  TVFLGGHHAI  HRVELVYDRD  QEGGGFGIQI  PVVIEWFVAT540
GRDHPVWAVT  WKMGEAANPQ  NRDFDDYLMD  VRGPYGSLNF  DGAASRNQGD  AIGGVAWGDF600
GLKFTTTDAQ  LTLNSPWTYN  TPNTVCFTQA  WTANENAEMG  IVQTRVADKE  MGYPGRVVGR660
ERGHTSAEDH  PDKGDCTDFG  PDNRNYSVPC  VNGWPYQLMN  SDWDPDSGKP  AAEATGTKLL720
AWGSPIGWLG  ASGFELFDGS  ASADGRGDRS  YATFIVLGPR  FRFDQGGEPA  GDVAITIKMV780
EALNAATISD  VQPGSLVTQV  ARGPGASQLK  NITHGYNDTY  AAYYLSASDN  QVAFSFTPAI840
GTAVKNPIFV  IQNYTTQRLP  SITVDGNPVS  VNTGADAGAF  VSLNPATSEL  WVTLNATIQA900
PMGVQIMI908

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help