Information for CAZyme ID: QSQ20098.1
Basic Information
GenBank ID | QSQ20098.1 |
Family | GH5 |
Sequence Length | 908 |
UniProt ID | QSQ20098.1(MOD)![]() |
Average pLDDT? | 89.17 |
CAZy50 ID | 18894 |
CAZy50 Rep | Yes, QSQ20098.1 |
Structure Cluster | SC_GH5_clus139 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2813578 |
Kingdom | Bacteria |
Phylum | Myxococcota |
Class | Myxococcia |
Order | Myxococcales |
Family | Myxococcaceae |
Genus | Pyxidicoccus |
Species | Pyxidicoccus parkwaysis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MVLLQTRLNA LPSARPLLDV DGDFGPKTLQ RVKEFQASGF VNGVVDAGTW SKLLDAPPAP | 60 |
RETFFVDGRH LHDPNGNRVV LRGINLPLLD DWSFPPGNRL ADLEKTGSNA VRIQWYIDYG | 120 |
NPNRPGYASA DLDAFLTQCK TNRMIPILGL WDVTCDADPT LVNTKLIPWW ISDEIVSILN | 180 |
KHRRYLIINL ANELGFYRWS GAPAVALDAF KSAHEMAITS IREKLHMPVM LDAPDCGTSI | 240 |
DAWLSIGQEL IDHDPDHNLL LSVHAYWADY DGMPHINSTV NANLPIVFGE VANKQGETIN | 300 |
NVTHDCFYDL DGLNQNHPPN FGFTYQSLLQ TLKTQEIGWL AWSWGPDSCQ SRNIGQYAQD | 360 |
SNQFEGLSEP FGNDIVNNPD YGLKASAERS SVFARDGDIT PSANSMTTAE GGIRHDPEGF | 420 |
APARKVNLLT WKDARNADRT LHLGAYLYQY DFSFDDGQRV ITRSANDDAH GHPGFGYVVS | 480 |
HSPTGNSPLG KVCPPSNVET TVFLGGHHAI HRVELVYDRD QEGGGFGIQI PVVIEWFVAT | 540 |
GRDHPVWAVT WKMGEAANPQ NRDFDDYLMD VRGPYGSLNF DGAASRNQGD AIGGVAWGDF | 600 |
GLKFTTTDAQ LTLNSPWTYN TPNTVCFTQA WTANENAEMG IVQTRVADKE MGYPGRVVGR | 660 |
ERGHTSAEDH PDKGDCTDFG PDNRNYSVPC VNGWPYQLMN SDWDPDSGKP AAEATGTKLL | 720 |
AWGSPIGWLG ASGFELFDGS ASADGRGDRS YATFIVLGPR FRFDQGGEPA GDVAITIKMV | 780 |
EALNAATISD VQPGSLVTQV ARGPGASQLK NITHGYNDTY AAYYLSASDN QVAFSFTPAI | 840 |
GTAVKNPIFV IQNYTTQRLP SITVDGNPVS VNTGADAGAF VSLNPATSEL WVTLNATIQA | 900 |
PMGVQIMI | 908 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.17 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MVLLQTRLNA LPSARPLLDV DGDFGPKTLQ RVKEFQASGF VNGVVDAGTW SKLLDAPPAP | 60 |
RETFFVDGRH LHDPNGNRVV LRGINLPLLD DWSFPPGNRL ADLEKTGSNA VRIQWYIDYG | 120 |
NPNRPGYASA DLDAFLTQCK TNRMIPILGL WDVTCDADPT LVNTKLIPWW ISDEIVSILN | 180 |
KHRRYLIINL ANELGFYRWS GAPAVALDAF KSAHEMAITS IREKLHMPVM LDAPDCGTSI | 240 |
DAWLSIGQEL IDHDPDHNLL LSVHAYWADY DGMPHINSTV NANLPIVFGE VANKQGETIN | 300 |
NVTHDCFYDL DGLNQNHPPN FGFTYQSLLQ TLKTQEIGWL AWSWGPDSCQ SRNIGQYAQD | 360 |
SNQFEGLSEP FGNDIVNNPD YGLKASAERS SVFARDGDIT PSANSMTTAE GGIRHDPEGF | 420 |
APARKVNLLT WKDARNADRT LHLGAYLYQY DFSFDDGQRV ITRSANDDAH GHPGFGYVVS | 480 |
HSPTGNSPLG KVCPPSNVET TVFLGGHHAI HRVELVYDRD QEGGGFGIQI PVVIEWFVAT | 540 |
GRDHPVWAVT WKMGEAANPQ NRDFDDYLMD VRGPYGSLNF DGAASRNQGD AIGGVAWGDF | 600 |
GLKFTTTDAQ LTLNSPWTYN TPNTVCFTQA WTANENAEMG IVQTRVADKE MGYPGRVVGR | 660 |
ERGHTSAEDH PDKGDCTDFG PDNRNYSVPC VNGWPYQLMN SDWDPDSGKP AAEATGTKLL | 720 |
AWGSPIGWLG ASGFELFDGS ASADGRGDRS YATFIVLGPR FRFDQGGEPA GDVAITIKMV | 780 |
EALNAATISD VQPGSLVTQV ARGPGASQLK NITHGYNDTY AAYYLSASDN QVAFSFTPAI | 840 |
GTAVKNPIFV IQNYTTQRLP SITVDGNPVS VNTGADAGAF VSLNPATSEL WVTLNATIQA | 900 |
PMGVQIMI | 908 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.