CAZyme3D

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Entry ID

Information for CAZyme ID: QSH41961.1

Basic Information

GenBank IDQSH41961.1
FamilyGH32
Sequence Length644
UniProt IDA0A974X091(100,100)Download
Average pLDDT?89.34
CAZy50 ID46097
CAZy50 RepYes, QSH41961.1
Structure ClusterSC_GH32_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1932692
KingdomBacteria
PhylumLentisphaerota
Class
Order
Family
Genus
SpeciesLentisphaerota bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYYNRIFCAA  LVLFIMSVVS  SGKAMTYQDT  LAAADLNVNS  NIKSAISDPT  YPVYHLRAPS60
GWINDPCGLF  YYNSSFHIFV  QSNPWGNMWG  NMAWSHIVSS  PNKKWDYKWF  YPRYQDGKVK120
TTAISPSLDS  SAADKNGVFT  GSVAVLPFKE  KDKAGRTITT  YYPAALYSAV  WGTHESRQEV180
IAMARALDAN  KISQGKLVDP  HLTEWTKYST  YSKNDPNNHP  DVILRQPADL  NLISFRDPYI240
FRMPDDKNYY  MIVSAGIKNK  NAAPSGVILL  FKNDGQDLTK  NWVRVNKGKN  FFFSTETAVK300
DAITKGGNIE  CGVVYRLTDH  IGTTNGSPYI  IIFGQDGSPA  KAYSKAMYYT  LGNIVKSKNG360
IVFEPLDSFK  EPDGKARKKL  LDLNPEFVFY  SSNLLPVDNE  QRHFLVSWLN  IGSQANDGKT420
YNWAGALSVP  RFLFVYKENG  IFKLGQDPIL  VNALRRKNVF  SSQKVKFSGN  NSVLPLRGVK480
GRHLNLVAEF  KSANITADTF  GFQLAVNGKK  YFPVTISQGK  LIINNRKPLD  LQLPSHEKRV540
KLDMYLDGAI  LEIFISKYVN  GNFISYRTYS  CALPSTGNVL  KEGINITGSE  NITAAVDVYE600
MDTCWSTEQE  VSAETEQLNK  AVCRNILPGM  GKTYVVSKKS  PAVK644

Predicted 3D structure by AlphaFold2 with pLDDT = 89.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MYYNRIFCAA  LVLFIMSVVS  SGKAMTYQDT  LAAADLNVNS  NIKSAISDPT  YPVYHLRAPS60
GWINDPCGLF  YYNSSFHIFV  QSNPWGNMWG  NMAWSHIVSS  PNKKWDYKWF  YPRYQDGKVK120
TTAISPSLDS  SAADKNGVFT  GSVAVLPFKE  KDKAGRTITT  YYPAALYSAV  WGTHESRQEV180
IAMARALDAN  KISQGKLVDP  HLTEWTKYST  YSKNDPNNHP  DVILRQPADL  NLISFRDPYI240
FRMPDDKNYY  MIVSAGIKNK  NAAPSGVILL  FKNDGQDLTK  NWVRVNKGKN  FFFSTETAVK300
DAITKGGNIE  CGVVYRLTDH  IGTTNGSPYI  IIFGQDGSPA  KAYSKAMYYT  LGNIVKSKNG360
IVFEPLDSFK  EPDGKARKKL  LDLNPEFVFY  SSNLLPVDNE  QRHFLVSWLN  IGSQANDGKT420
YNWAGALSVP  RFLFVYKENG  IFKLGQDPIL  VNALRRKNVF  SSQKVKFSGN  NSVLPLRGVK480
GRHLNLVAEF  KSANITADTF  GFQLAVNGKK  YFPVTISQGK  LIINNRKPLD  LQLPSHEKRV540
KLDMYLDGAI  LEIFISKYVN  GNFISYRTYS  CALPSTGNVL  KEGINITGSE  NITAAVDVYE600
MDTCWSTEQE  VSAETEQLNK  AVCRNILPGM  GKTYVVSKKS  PAVK644

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(55-447)

MYYNRIFCAA  LVLFIMSVVS  SGKAMTYQDT  LAAADLNVNS  NIKSAISDPT  YPVYHLRAPS60
GWINDPCGLF  YYNSSFHIFV  QSNPWGNMWG  NMAWSHIVSS  PNKKWDYKWF  YPRYQDGKVK120
TTAISPSLDS  SAADKNGVFT  GSVAVLPFKE  KDKAGRTITT  YYPAALYSAV  WGTHESRQEV180
IAMARALDAN  KISQGKLVDP  HLTEWTKYST  YSKNDPNNHP  DVILRQPADL  NLISFRDPYI240
FRMPDDKNYY  MIVSAGIKNK  NAAPSGVILL  FKNDGQDLTK  NWVRVNKGKN  FFFSTETAVK300
DAITKGGNIE  CGVVYRLTDH  IGTTNGSPYI  IIFGQDGSPA  KAYSKAMYYT  LGNIVKSKNG360
IVFEPLDSFK  EPDGKARKKL  LDLNPEFVFY  SSNLLPVDNE  QRHFLVSWLN  IGSQANDGKT420
YNWAGALSVP  RFLFVYKENG  IFKLGQDPIL  VNALRRKNVF  SSQKVKFSGN  NSVLPLRGVK480
GRHLNLVAEF  KSANITADTF  GFQLAVNGKK  YFPVTISQGK  LIINNRKPLD  LQLPSHEKRV540
KLDMYLDGAI  LEIFISKYVN  GNFISYRTYS  CALPSTGNVL  KEGINITGSE  NITAAVDVYE600
MDTCWSTEQE  VSAETEQLNK  AVCRNILPGM  GKTYVVSKKS  PAVK644

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help