CAZyme3D

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Entry ID

Information for CAZyme ID: QSF46216.1

Basic Information

GenBank IDQSF46216.1
FamilyCBM6, GH43_16
Sequence Length1258
UniProt IDQSF46216.1(MOD)Download
Average pLDDT?89.85
CAZy50 ID6804
CAZy50 RepYes, QSF46216.1
Structure ClusterSC_CBM6_clus10, SC_GH43_clus69
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2810347
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus tianjinensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIWNKLLAM  MMVVTLTFVS  NPATVRVQAA  ASPLTPALAK  TPGNGNPLFT  QKFGADPFAM60
VYNGRVYVYM  TNDVLEYNAD  GTVKDNGYSK  INKITVVSSD  DMVNWTDHGE  ILAAGPQGAA120
KWANNSWAPS  AAHKTIDGKE  KFFLYFADNG  SGIGVLTADS  PIGPFTDPIG  KQLVSRSTPG180
ASDVTWLFDP  AVLVDDDGSG  YLYFGGGIPA  GKDADPGTAR  VAKLGADMIS  LDLDASGGTL240
GRINPPWLFE  DSGIHKYNGK  YYYSYCTNFS  SGHPSDIPTG  TIAYMVSDNP  MGPFTFVKTI300
LPNPATFFGA  GGNNHHAIFE  FNNQWYVTYH  AQTLAKAMAE  SGSYPQMGGQ  PHGYRNAHIN360
KVSFDANGVI  QNITGDYTGV  PQLKNLDPYT  RVEAETIGWN  GGISTESSTE  PGGMVSSINL420
AVSNINDGDW  TAVSKVDFGA  TGAGTFKANV  ASGSGGGNIE  LYLDSADGTL  IGTLPVSNTG480
GESSWKTKTT  SISGATGVHD  LYMVYKGSST  GNLFKVDSWQ  FEQKSAAHDL  VAINASIDKQ540
KIDIVTGTNQ  ANMKVSAIYA  DGTSTDVTAE  AVATPAQSGI  VSVNNGVVTG  VGYGSTSIDV600
TYGGKTDTLN  MLVKDLNSEL  TVKKITVDNA  SVVLDSGKTA  TFKVIAEYVD  GQTEDVTKTA660
IYSNSSPAIA  DVAGGTITAK  ASGTTNVTVS  FKGAVGAAVT  AQITVVVNTP  AVVAIEAETA720
AENTATAYVY  GTINGHTWSL  VDGQSTKAMF  FGPNNGFAAS  ATDAASLAAN  SRLGYKINFT780
TAGTYNVWIL  VKTLGFDSDS  IHVGLDNQYK  FTSNGIEGVS  GGQFKWANIS  GNSGGIFGGA840
TLNVTAGEHE  LNFWGREDGL  AIDRIYLTTS  SSTADPVWPS  SSVAVTGVTL  DKSSLSLATG900
STETLTATIT  PADATNKTVT  FSSNDTGVAT  VTGAVYDSST  GTTSVTVHAI  AAGNAVITVT960
TADGNQTAVS  NVTVTPSVEP  QVPTAALSAD  SSVNPGSSFI  VAVSLNNAEQ  RVFAEDITLT1020
YDSNLFEYVS  AAGADNNIQI  VTEDKANAGK  VRLIAANIGG  ISGASTPVLN  LTFKVKAGVQ1080
NTTGTIAATE  AKLGIAPEGT  VIEAALSSKS  ISIGRIEVVV  DKTALTTTIT  KAQSLYDASV1140
VGTQPGQYPQ  AAKDALGAAI  NAAKAVKDNQ  SATQYQVDSA  VTALVSAEET  FEAAVIKAAS1200
ADLNNDKIIN  VGDLAIVAYY  YGKDSTSPDW  AKAKIADLNG  DNKVDIIDLA  YVATKILE1258

Predicted 3D structure by AlphaFold2 with pLDDT = 89.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKIWNKLLAM  MMVVTLTFVS  NPATVRVQAA  ASPLTPALAK  TPGNGNPLFT  QKFGADPFAM60
VYNGRVYVYM  TNDVLEYNAD  GTVKDNGYSK  INKITVVSSD  DMVNWTDHGE  ILAAGPQGAA120
KWANNSWAPS  AAHKTIDGKE  KFFLYFADNG  SGIGVLTADS  PIGPFTDPIG  KQLVSRSTPG180
ASDVTWLFDP  AVLVDDDGSG  YLYFGGGIPA  GKDADPGTAR  VAKLGADMIS  LDLDASGGTL240
GRINPPWLFE  DSGIHKYNGK  YYYSYCTNFS  SGHPSDIPTG  TIAYMVSDNP  MGPFTFVKTI300
LPNPATFFGA  GGNNHHAIFE  FNNQWYVTYH  AQTLAKAMAE  SGSYPQMGGQ  PHGYRNAHIN360
KVSFDANGVI  QNITGDYTGV  PQLKNLDPYT  RVEAETIGWN  GGISTESSTE  PGGMVSSINL420
AVSNINDGDW  TAVSKVDFGA  TGAGTFKANV  ASGSGGGNIE  LYLDSADGTL  IGTLPVSNTG480
GESSWKTKTT  SISGATGVHD  LYMVYKGSST  GNLFKVDSWQ  FEQKSAAHDL  VAINASIDKQ540
KIDIVTGTNQ  ANMKVSAIYA  DGTSTDVTAE  AVATPAQSGI  VSVNNGVVTG  VGYGSTSIDV600
TYGGKTDTLN  MLVKDLNSEL  TVKKITVDNA  SVVLDSGKTA  TFKVIAEYVD  GQTEDVTKTA660
IYSNSSPAIA  DVAGGTITAK  ASGTTNVTVS  FKGAVGAAVT  AQITVVVNTP  AVVAIEAETA720
AENTATAYVY  GTINGHTWSL  VDGQSTKAMF  FGPNNGFAAS  ATDAASLAAN  SRLGYKINFT780
TAGTYNVWIL  VKTLGFDSDS  IHVGLDNQYK  FTSNGIEGVS  GGQFKWANIS  GNSGGIFGGA840
TLNVTAGEHE  LNFWGREDGL  AIDRIYLTTS  SSTADPVWPS  SSVAVTGVTL  DKSSLSLATG900
STETLTATIT  PADATNKTVT  FSSNDTGVAT  VTGAVYDSST  GTTSVTVHAI  AAGNAVITVT960
TADGNQTAVS  NVTVTPSVEP  QVPTAALSAD  SSVNPGSSFI  VAVSLNNAEQ  RVFAEDITLT1020
YDSNLFEYVS  AAGADNNIQI  VTEDKANAGK  VRLIAANIGG  ISGASTPVLN  LTFKVKAGVQ1080
NTTGTIAATE  AKLGIAPEGT  VIEAALSSKS  ISIGRIEVVV  DKTALTTTIT  KAQSLYDASV1140
VGTQPGQYPQ  AAKDALGAAI  NAAKAVKDNQ  SATQYQVDSA  VTALVSAEET  FEAAVIKAAS1200
ADLNNDKIIN  VGDLAIVAYY  YGKDSTSPDW  AKAKIADLNG  DNKVDIIDLA  YVATKILE1258

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_16(46-370)+CBM6(392-523)+CBM6(760-868)

MKIWNKLLAM  MMVVTLTFVS  NPATVRVQAA  ASPLTPALAK  TPGNGNPLFT  QKFGADPFAM60
VYNGRVYVYM  TNDVLEYNAD  GTVKDNGYSK  INKITVVSSD  DMVNWTDHGE  ILAAGPQGAA120
KWANNSWAPS  AAHKTIDGKE  KFFLYFADNG  SGIGVLTADS  PIGPFTDPIG  KQLVSRSTPG180
ASDVTWLFDP  AVLVDDDGSG  YLYFGGGIPA  GKDADPGTAR  VAKLGADMIS  LDLDASGGTL240
GRINPPWLFE  DSGIHKYNGK  YYYSYCTNFS  SGHPSDIPTG  TIAYMVSDNP  MGPFTFVKTI300
LPNPATFFGA  GGNNHHAIFE  FNNQWYVTYH  AQTLAKAMAE  SGSYPQMGGQ  PHGYRNAHIN360
KVSFDANGVI  QNITGDYTGV  PQLKNLDPYT  RVEAETIGWN  GGISTESSTE  PGGMVSSINL420
AVSNINDGDW  TAVSKVDFGA  TGAGTFKANV  ASGSGGGNIE  LYLDSADGTL  IGTLPVSNTG480
GESSWKTKTT  SISGATGVHD  LYMVYKGSST  GNLFKVDSWQ  FEQKSAAHDL  VAINASIDKQ540
KIDIVTGTNQ  ANMKVSAIYA  DGTSTDVTAE  AVATPAQSGI  VSVNNGVVTG  VGYGSTSIDV600
TYGGKTDTLN  MLVKDLNSEL  TVKKITVDNA  SVVLDSGKTA  TFKVIAEYVD  GQTEDVTKTA660
IYSNSSPAIA  DVAGGTITAK  ASGTTNVTVS  FKGAVGAAVT  AQITVVVNTP  AVVAIEAETA720
AENTATAYVY  GTINGHTWSL  VDGQSTKAMF  FGPNNGFAAS  ATDAASLAAN  SRLGYKINFT780
TAGTYNVWIL  VKTLGFDSDS  IHVGLDNQYK  FTSNGIEGVS  GGQFKWANIS  GNSGGIFGGA840
TLNVTAGEHE  LNFWGREDGL  AIDRIYLTTS  SSTADPVWPS  SSVAVTGVTL  DKSSLSLATG900
STETLTATIT  PADATNKTVT  FSSNDTGVAT  VTGAVYDSST  GTTSVTVHAI  AAGNAVITVT960
TADGNQTAVS  NVTVTPSVEP  QVPTAALSAD  SSVNPGSSFI  VAVSLNNAEQ  RVFAEDITLT1020
YDSNLFEYVS  AAGADNNIQI  VTEDKANAGK  VRLIAANIGG  ISGASTPVLN  LTFKVKAGVQ1080
NTTGTIAATE  AKLGIAPEGT  VIEAALSSKS  ISIGRIEVVV  DKTALTTTIT  KAQSLYDASV1140
VGTQPGQYPQ  AAKDALGAAI  NAAKAVKDNQ  SATQYQVDSA  VTALVSAEET  FEAAVIKAAS1200
ADLNNDKIIN  VGDLAIVAYY  YGKDSTSPDW  AKAKIADLNG  DNKVDIIDLA  YVATKILE1258

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help