CAZyme3D

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Entry ID

Information for CAZyme ID: QRW20796.1

Basic Information

GenBank IDQRW20796.1
FamilyGH3
Sequence Length742
UniProt IDA0A8H8NYR5(100,100)Download
Average pLDDT?85.28
CAZy50 ID33673
CAZy50 RepYes, QRW20796.1
Structure ClusterSC_GH3_clus123
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID456999
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderCantharellales
FamilyCeratobasidiaceae
GenusRhizoctonia
SpeciesRhizoctonia solani

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTSLLAASF  VLYFNASLAL  PGERRQATNS  TWSGPLANGG  SAWKHAFAKA  KEVVSKMTLE60
EKVNITTGIG  SSSTCAGNTG  AVPRLNIPTF  CLQDGPAGVR  PADFASQFPA  QVTVAATWDR120
DLIYDRAVAI  ADEFRGKGVH  VALAPVTGGP  LGRSPLGGRN  WEGFSADPYL  SSIGSYITVK180
GIQDRGVVAT  SKHYSLYEQE  TYRNQKLLPP  RYNGTYHPLP  ISSDVDDVGH  LPRNIPVVVC240
RGFRAGTGSI  MCSYNRVNGS  HGCEDDVTLN  QVLKGELDYQ  GYVMSDWYAH  WTNEGAALGG300
MDMTMPGTGF  WGADLVALVK  NGTDKGFPSL  QYNTSGIGSQ  TYLALNPGNT  NVNVQADHYK360
LIRKIGEESA  TLLKNTRTHG  GGIPLKKSKC  TADHANNGTS  SIGGGSGAAY  APYIVTPLEG420
IQSRTSANET  QVNWLLNDWD  LGTAKTSAKI  ADTSIVFTYA  YQTESRDRDN  LTAWSNGDNL480
IKTVAAECNN  TIVVVHSGQQ  ILMDDWIEHP  NITAVIFAYY  PGQETGNAIA  SILFGEVNPS540
GKVSPKTSFL  PFTIAKSASD  YPPNGIFTEN  VTDPHIVFEE  GNLIDYRWFD  AKNITPRFEF600
GFGLSLTTFN  YSNLKIRSTP  GNPIDGIQLT  KEPFDGSGTL  YDIAYTVTAT  VKNTGSINGC660
EVTQLYLSYP  STQTSQPLRS  LRGFDKLCLN  RGESKTTSFK  LRQKDYAVWD  VVRQTWTIPK720
GEFTVHVGSS  SRVLPLKSMF  NV742

Predicted 3D structure by AlphaFold2 with pLDDT = 85.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRTSLLAASF  VLYFNASLAL  PGERRQATNS  TWSGPLANGG  SAWKHAFAKA  KEVVSKMTLE60
EKVNITTGIG  SSSTCAGNTG  AVPRLNIPTF  CLQDGPAGVR  PADFASQFPA  QVTVAATWDR120
DLIYDRAVAI  ADEFRGKGVH  VALAPVTGGP  LGRSPLGGRN  WEGFSADPYL  SSIGSYITVK180
GIQDRGVVAT  SKHYSLYEQE  TYRNQKLLPP  RYNGTYHPLP  ISSDVDDVGH  LPRNIPVVVC240
RGFRAGTGSI  MCSYNRVNGS  HGCEDDVTLN  QVLKGELDYQ  GYVMSDWYAH  WTNEGAALGG300
MDMTMPGTGF  WGADLVALVK  NGTDKGFPSL  QYNTSGIGSQ  TYLALNPGNT  NVNVQADHYK360
LIRKIGEESA  TLLKNTRTHG  GGIPLKKSKC  TADHANNGTS  SIGGGSGAAY  APYIVTPLEG420
IQSRTSANET  QVNWLLNDWD  LGTAKTSAKI  ADTSIVFTYA  YQTESRDRDN  LTAWSNGDNL480
IKTVAAECNN  TIVVVHSGQQ  ILMDDWIEHP  NITAVIFAYY  PGQETGNAIA  SILFGEVNPS540
GKVSPKTSFL  PFTIAKSASD  YPPNGIFTEN  VTDPHIVFEE  GNLIDYRWFD  AKNITPRFEF600
GFGLSLTTFN  YSNLKIRSTP  GNPIDGIQLT  KEPFDGSGTL  YDIAYTVTAT  VKNTGSINGC660
EVTQLYLSYP  STQTSQPLRS  LRGFDKLCLN  RGESKTTSFK  LRQKDYAVWD  VVRQTWTIPK720
GEFTVHVGSS  SRVLPLKSMF  NV742

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(81-306)

MRTSLLAASF  VLYFNASLAL  PGERRQATNS  TWSGPLANGG  SAWKHAFAKA  KEVVSKMTLE60
EKVNITTGIG  SSSTCAGNTG  AVPRLNIPTF  CLQDGPAGVR  PADFASQFPA  QVTVAATWDR120
DLIYDRAVAI  ADEFRGKGVH  VALAPVTGGP  LGRSPLGGRN  WEGFSADPYL  SSIGSYITVK180
GIQDRGVVAT  SKHYSLYEQE  TYRNQKLLPP  RYNGTYHPLP  ISSDVDDVGH  LPRNIPVVVC240
RGFRAGTGSI  MCSYNRVNGS  HGCEDDVTLN  QVLKGELDYQ  GYVMSDWYAH  WTNEGAALGG300
MDMTMPGTGF  WGADLVALVK  NGTDKGFPSL  QYNTSGIGSQ  TYLALNPGNT  NVNVQADHYK360
LIRKIGEESA  TLLKNTRTHG  GGIPLKKSKC  TADHANNGTS  SIGGGSGAAY  APYIVTPLEG420
IQSRTSANET  QVNWLLNDWD  LGTAKTSAKI  ADTSIVFTYA  YQTESRDRDN  LTAWSNGDNL480
IKTVAAECNN  TIVVVHSGQQ  ILMDDWIEHP  NITAVIFAYY  PGQETGNAIA  SILFGEVNPS540
GKVSPKTSFL  PFTIAKSASD  YPPNGIFTEN  VTDPHIVFEE  GNLIDYRWFD  AKNITPRFEF600
GFGLSLTTFN  YSNLKIRSTP  GNPIDGIQLT  KEPFDGSGTL  YDIAYTVTAT  VKNTGSINGC660
EVTQLYLSYP  STQTSQPLRS  LRGFDKLCLN  RGESKTTSFK  LRQKDYAVWD  VVRQTWTIPK720
GEFTVHVGSS  SRVLPLKSMF  NV742

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help