CAZyme3D

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Entry ID

Information for CAZyme ID: QRW20719.1

Basic Information

GenBank IDQRW20719.1
FamilyCE4
Sequence Length1247
UniProt IDA0A8H8NVK9(100,100)Download
Average pLDDT?67.07
CAZy50 ID6986
CAZy50 RepYes, QRW20719.1
Structure ClusterSC_CE4_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID456999
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderCantharellales
FamilyCeratobasidiaceae
GenusRhizoctonia
SpeciesRhizoctonia solani

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSVRYTRPAS  RPSISSHTYN  KRSGDTRAQD  ASFTAETSFV  HAPLNSRVQK  PTNNERERAP60
PLRDMPLEVQ  EAIILEDLLS  VLLGIDGTYI  ARTGPENRSI  YCRFWTRSCA  ERSGGQDATT120
SDHHYCSCVG  FVEARAHIEF  GSVCHALCAA  VRSVLKDYTT  LITQLEHLFH  TSPAFSLQQL180
WFHVHPVMRT  LSLIHSVADD  IISPPTASLS  PSSSAASDEE  EDEEERKKNE  ELGLGGVKAV240
LMGLALALRA  GNVQGGEVLG  ILWDRWVAMS  GDPPASALLR  KLLTAASAPY  AQILRTWTHH300
GTLHDPHGEF  FVRARVGAGE  GVKGGRGTRE  DYTDEYWERR  YTLRDGSHAP  HPSTAASTGQ360
SVLSAPPPPS  ALVPRPRVPG  GRLPGGACVP  PSLEGWKHKV  LLAGKYLNVV  REWGGDAAGV420
RIGLKELEDR  AKGIAKDSEG  DEEGTERAAS  RASNRKPRGS  TSDKAKPKDS  ASNDGDTTGS480
TDGAMDTPPF  YKSVEEAYTY  ANRTLLRVLM  EDQMLVPRLR  SLKYYFFLPR  SSFLTHFLDL540
AHLELQSTRA  GDQRSRRTNK  FRFSCGSVRS  RGVGTNSRPP  KHGDAPSFRE  DVKISMASSG600
LYEWLLKVVS  VSGAIDDTGG  DGNDEQFAAS  RSRIPIHLKH  VEQMLGGMWV  EQMLGAWRHP660
VITRAGSGLE  SRSVSRSESR  ASHHSGPSSA  HPNNPGAQSS  LPNTIPNPNH  PHTSHYPTAL720
HADFERWRRR  VFLLRARMLA  FVQQILAFAT  FEVLEPNWKA  LEKRLERVST  VDQVLRDHVD780
FLDTCLKECM  LTSAKLLRVY  SNLLVTISMF  AQYASSFTRS  ARDVLTALEQ  EANGEPAARP840
VDMKKEWFCY  TRVYQPNRDP  IASIYASMPT  QATVPLDTTY  TAGATPPVSG  APALPTRSAI900
IPSNYPALDQ  VPPINSPEVQ  QWIKEVQNSG  VVIPGFAPTQ  PGGCSDPSNA  AAVANASASG960
TCWWTCGGCS  RDTDITTCPD  QKTWGLSFDD  GPSPYTPNLL  QYLDQQKLKS  TFFIVGSRAI1020
SRPEILQTQY  MGGHQLSVHT  WSHPSLTTLS  TEQIIAELGW  TKKAIKEITG  VTPNTMRPPY1080
GDLDDRVRAI  SKAMGLTPII  WTSAGGGDFD  TNDWHVPGGL  SAEVVLSSFE  TILSKASTLN1140
TGFIVLSHDL  YQQTVDIATG  YIIPDALARG  FQLKNIVTCL  RKPLSEAYIE  TSSNKTSPAS1200
TGTLDVSSSG  TLSTSSTATP  IHGSSSSSSS  VGSKNNAQTH  SAKAPLA1247

Predicted 3D structure by AlphaFold2 with pLDDT = 67.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSVRYTRPAS  RPSISSHTYN  KRSGDTRAQD  ASFTAETSFV  HAPLNSRVQK  PTNNERERAP60
PLRDMPLEVQ  EAIILEDLLS  VLLGIDGTYI  ARTGPENRSI  YCRFWTRSCA  ERSGGQDATT120
SDHHYCSCVG  FVEARAHIEF  GSVCHALCAA  VRSVLKDYTT  LITQLEHLFH  TSPAFSLQQL180
WFHVHPVMRT  LSLIHSVADD  IISPPTASLS  PSSSAASDEE  EDEEERKKNE  ELGLGGVKAV240
LMGLALALRA  GNVQGGEVLG  ILWDRWVAMS  GDPPASALLR  KLLTAASAPY  AQILRTWTHH300
GTLHDPHGEF  FVRARVGAGE  GVKGGRGTRE  DYTDEYWERR  YTLRDGSHAP  HPSTAASTGQ360
SVLSAPPPPS  ALVPRPRVPG  GRLPGGACVP  PSLEGWKHKV  LLAGKYLNVV  REWGGDAAGV420
RIGLKELEDR  AKGIAKDSEG  DEEGTERAAS  RASNRKPRGS  TSDKAKPKDS  ASNDGDTTGS480
TDGAMDTPPF  YKSVEEAYTY  ANRTLLRVLM  EDQMLVPRLR  SLKYYFFLPR  SSFLTHFLDL540
AHLELQSTRA  GDQRSRRTNK  FRFSCGSVRS  RGVGTNSRPP  KHGDAPSFRE  DVKISMASSG600
LYEWLLKVVS  VSGAIDDTGG  DGNDEQFAAS  RSRIPIHLKH  VEQMLGGMWV  EQMLGAWRHP660
VITRAGSGLE  SRSVSRSESR  ASHHSGPSSA  HPNNPGAQSS  LPNTIPNPNH  PHTSHYPTAL720
HADFERWRRR  VFLLRARMLA  FVQQILAFAT  FEVLEPNWKA  LEKRLERVST  VDQVLRDHVD780
FLDTCLKECM  LTSAKLLRVY  SNLLVTISMF  AQYASSFTRS  ARDVLTALEQ  EANGEPAARP840
VDMKKEWFCY  TRVYQPNRDP  IASIYASMPT  QATVPLDTTY  TAGATPPVSG  APALPTRSAI900
IPSNYPALDQ  VPPINSPEVQ  QWIKEVQNSG  VVIPGFAPTQ  PGGCSDPSNA  AAVANASASG960
TCWWTCGGCS  RDTDITTCPD  QKTWGLSFDD  GPSPYTPNLL  QYLDQQKLKS  TFFIVGSRAI1020
SRPEILQTQY  MGGHQLSVHT  WSHPSLTTLS  TEQIIAELGW  TKKAIKEITG  VTPNTMRPPY1080
GDLDDRVRAI  SKAMGLTPII  WTSAGGGDFD  TNDWHVPGGL  SAEVVLSSFE  TILSKASTLN1140
TGFIVLSHDL  YQQTVDIATG  YIIPDALARG  FQLKNIVTCL  RKPLSEAYIE  TSSNKTSPAS1200
TGTLDVSSSG  TLSTSSTATP  IHGSSSSSSS  VGSKNNAQTH  SAKAPLA1247

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(980-1097)

MSVRYTRPAS  RPSISSHTYN  KRSGDTRAQD  ASFTAETSFV  HAPLNSRVQK  PTNNERERAP60
PLRDMPLEVQ  EAIILEDLLS  VLLGIDGTYI  ARTGPENRSI  YCRFWTRSCA  ERSGGQDATT120
SDHHYCSCVG  FVEARAHIEF  GSVCHALCAA  VRSVLKDYTT  LITQLEHLFH  TSPAFSLQQL180
WFHVHPVMRT  LSLIHSVADD  IISPPTASLS  PSSSAASDEE  EDEEERKKNE  ELGLGGVKAV240
LMGLALALRA  GNVQGGEVLG  ILWDRWVAMS  GDPPASALLR  KLLTAASAPY  AQILRTWTHH300
GTLHDPHGEF  FVRARVGAGE  GVKGGRGTRE  DYTDEYWERR  YTLRDGSHAP  HPSTAASTGQ360
SVLSAPPPPS  ALVPRPRVPG  GRLPGGACVP  PSLEGWKHKV  LLAGKYLNVV  REWGGDAAGV420
RIGLKELEDR  AKGIAKDSEG  DEEGTERAAS  RASNRKPRGS  TSDKAKPKDS  ASNDGDTTGS480
TDGAMDTPPF  YKSVEEAYTY  ANRTLLRVLM  EDQMLVPRLR  SLKYYFFLPR  SSFLTHFLDL540
AHLELQSTRA  GDQRSRRTNK  FRFSCGSVRS  RGVGTNSRPP  KHGDAPSFRE  DVKISMASSG600
LYEWLLKVVS  VSGAIDDTGG  DGNDEQFAAS  RSRIPIHLKH  VEQMLGGMWV  EQMLGAWRHP660
VITRAGSGLE  SRSVSRSESR  ASHHSGPSSA  HPNNPGAQSS  LPNTIPNPNH  PHTSHYPTAL720
HADFERWRRR  VFLLRARMLA  FVQQILAFAT  FEVLEPNWKA  LEKRLERVST  VDQVLRDHVD780
FLDTCLKECM  LTSAKLLRVY  SNLLVTISMF  AQYASSFTRS  ARDVLTALEQ  EANGEPAARP840
VDMKKEWFCY  TRVYQPNRDP  IASIYASMPT  QATVPLDTTY  TAGATPPVSG  APALPTRSAI900
IPSNYPALDQ  VPPINSPEVQ  QWIKEVQNSG  VVIPGFAPTQ  PGGCSDPSNA  AAVANASASG960
TCWWTCGGCS  RDTDITTCPD  QKTWGLSFDD  GPSPYTPNLL  QYLDQQKLKS  TFFIVGSRAI1020
SRPEILQTQY  MGGHQLSVHT  WSHPSLTTLS  TEQIIAELGW  TKKAIKEITG  VTPNTMRPPY1080
GDLDDRVRAI  SKAMGLTPII  WTSAGGGDFD  TNDWHVPGGL  SAEVVLSSFE  TILSKASTLN1140
TGFIVLSHDL  YQQTVDIATG  YIIPDALARG  FQLKNIVTCL  RKPLSEAYIE  TSSNKTSPAS1200
TGTLDVSSSG  TLSTSSTATP  IHGSSSSSSS  VGSKNNAQTH  SAKAPLA1247

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help