CAZyme3D

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Entry ID

Information for CAZyme ID: QRW19470.1

Basic Information

GenBank IDQRW19470.1
FamilyGH43_22
Sequence Length670
UniProt IDA0A8H8NVM8(100,100)Download
Average pLDDT?91.77
CAZy50 ID42334
CAZy50 RepYes, QRW19470.1
Structure ClusterSC_GH43_clus277
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID456999
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderCantharellales
FamilyCeratobasidiaceae
GenusRhizoctonia
SpeciesRhizoctonia solani

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRPLASLLSV  AIAIAACVTA  APIQERQNAY  SAYMFAYFTG  EGYSNGETIS  FAVSNGNDAL60
HWTEVNRGNP  YLTSTLGTKG  VRDPSIIRAH  DGSKFWLLAT  DLKMYGSGDW  NAAVRTGSRS120
IVIWESTDLK  NWGTPRLVQV  SPATAGNTWA  PEAIWDPSQN  KYVVFWASSL  YAASDTAHTG180
SSYHRILRAT  TTDFKTFSAP  EVYIDKGWAV  IDTTFAYDSS  TATYYRFSKD  ERANSSSAPN240
GKFVFQEKGS  SISGSFSLIK  EGVGKGSVSR  GEGPTVFKSN  TESNKWYMFI  DEFGGRGYVP300
FETTNIASGA  WTLSTGYSLP  SRPRHGSVIP  ITEAERQRLL  ITASLALAGA  VKEKRATYSA360
YMFAYFTGEG  YSNGETISFA  VSNGNSPLNW  TEVHGGTPYL  TSTVGTRGVR  DPSIIRSQDG420
SKFWLLATDL  KIYGNGNWNA  AVRTGSRSIV  IWESTNLKDW  GSPRLVEVSP  PTAGNTWAPE480
AIWDPQQSAY  IVFWASSLYA  ANDTSHTGTS  YHRILRSTTT  DFKSFTPAQV  YIDYGWSVID540
TTMVRDTTTG  TYYRFNKDER  SPSSNTPDSK  FIAQEKSSSV  TGTWSGVVAG  IGKGVLTRGE600
GPTVFKSNTE  ANKWHMFIDE  YGGRGYVPFE  TTNIAAGTWA  VSTNYALPSR  PRHGSVIPIT660
EAERQVLLGL  670

Predicted 3D structure by AlphaFold2 with pLDDT = 91.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRPLASLLSV  AIAIAACVTA  APIQERQNAY  SAYMFAYFTG  EGYSNGETIS  FAVSNGNDAL60
HWTEVNRGNP  YLTSTLGTKG  VRDPSIIRAH  DGSKFWLLAT  DLKMYGSGDW  NAAVRTGSRS120
IVIWESTDLK  NWGTPRLVQV  SPATAGNTWA  PEAIWDPSQN  KYVVFWASSL  YAASDTAHTG180
SSYHRILRAT  TTDFKTFSAP  EVYIDKGWAV  IDTTFAYDSS  TATYYRFSKD  ERANSSSAPN240
GKFVFQEKGS  SISGSFSLIK  EGVGKGSVSR  GEGPTVFKSN  TESNKWYMFI  DEFGGRGYVP300
FETTNIASGA  WTLSTGYSLP  SRPRHGSVIP  ITEAERQRLL  ITASLALAGA  VKEKRATYSA360
YMFAYFTGEG  YSNGETISFA  VSNGNSPLNW  TEVHGGTPYL  TSTVGTRGVR  DPSIIRSQDG420
SKFWLLATDL  KIYGNGNWNA  AVRTGSRSIV  IWESTNLKDW  GSPRLVEVSP  PTAGNTWAPE480
AIWDPQQSAY  IVFWASSLYA  ANDTSHTGTS  YHRILRSTTT  DFKSFTPAQV  YIDYGWSVID540
TTMVRDTTTG  TYYRFNKDER  SPSSNTPDSK  FIAQEKSSSV  TGTWSGVVAG  IGKGVLTRGE600
GPTVFKSNTE  ANKWHMFIDE  YGGRGYVPFE  TTNIAAGTWA  VSTNYALPSR  PRHGSVIPIT660
EAERQVLLGL  670

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_22(78-293)+GH43_22(407-621)

MRPLASLLSV  AIAIAACVTA  APIQERQNAY  SAYMFAYFTG  EGYSNGETIS  FAVSNGNDAL60
HWTEVNRGNP  YLTSTLGTKG  VRDPSIIRAH  DGSKFWLLAT  DLKMYGSGDW  NAAVRTGSRS120
IVIWESTDLK  NWGTPRLVQV  SPATAGNTWA  PEAIWDPSQN  KYVVFWASSL  YAASDTAHTG180
SSYHRILRAT  TTDFKTFSAP  EVYIDKGWAV  IDTTFAYDSS  TATYYRFSKD  ERANSSSAPN240
GKFVFQEKGS  SISGSFSLIK  EGVGKGSVSR  GEGPTVFKSN  TESNKWYMFI  DEFGGRGYVP300
FETTNIASGA  WTLSTGYSLP  SRPRHGSVIP  ITEAERQRLL  ITASLALAGA  VKEKRATYSA360
YMFAYFTGEG  YSNGETISFA  VSNGNSPLNW  TEVHGGTPYL  TSTVGTRGVR  DPSIIRSQDG420
SKFWLLATDL  KIYGNGNWNA  AVRTGSRSIV  IWESTNLKDW  GSPRLVEVSP  PTAGNTWAPE480
AIWDPQQSAY  IVFWASSLYA  ANDTSHTGTS  YHRILRSTTT  DFKSFTPAQV  YIDYGWSVID540
TTMVRDTTTG  TYYRFNKDER  SPSSNTPDSK  FIAQEKSSSV  TGTWSGVVAG  IGKGVLTRGE600
GPTVFKSNTE  ANKWHMFIDE  YGGRGYVPFE  TTNIAAGTWA  VSTNYALPSR  PRHGSVIPIT660
EAERQVLLGL  670

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help