CAZyme3D

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Entry ID

Information for CAZyme ID: QRW12873.1

Basic Information

GenBank IDQRW12873.1
FamilyGH37
Sequence Length781
UniProt IDA0A8H8NIE8(100,100)Download
Average pLDDT?88.23
CAZy50 ID29296
CAZy50 RepYes, QRW12873.1
Structure ClusterSC_GH37_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID170446
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderCantharellales
FamilyCeratobasidiaceae
GenusCeratobasidium
SpeciesCeratobasidium sp. AG-Ba

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLSPVLWLA  LVFSKLSLSY  PFSQGSLVLN  DRSAYHAHAR  DAGMCRQRND  PNRVLVIPGP60
DVISQFSVCQ  GRNEFGELVS  DTSGTVYCNG  TLIHLWNDAR  DHRGDSKTFV  DRASNFSGSQ120
INLAIENILL  QRQFKASEFI  SEMEAMFQFN  NPGEELQEYD  NIRFPNTPLV  VSQIRPQAKV180
FRAWTKIVHH  YWNNLDRKMI  QNCIGDREET  VDAQLLPGPG  SPPANSDTET  YGYSRLETEK240
CATSIIRLEH  PFVIAGGRFR  EQYYWDSFFV  MEGMLAANMT  YLARTTLLNF  MDEIRSYGFI300
PNGGRKYYLN  RSQPPLFVHM  LYAYVHNTND  TAVLHGALPL  AEKELRWWSE  NRSIRVQSPS360
SPSKVHRVYH  YNVQADGPRP  ESYAEDWMTA  WCDDKPPSRE  YESMVYSELA  SGVESGWDYT420
ARWMGNPSTL  PEDRIEQMRR  VRIRRIIPVD  LNSILYRCHM  LMADLYQLAV  DDESPYAGQH480
KRRHLSAASN  LRTAILDLNW  SEARAAFYDF  GLDEANAPEI  PQTGHIGTFW  SGASLAPYWS540
EIWPDSVVRN  QSKAMEAFAG  VRDLLRRYEG  PLPATVTKSG  QQWDFPNAWP  PLQYIAIKAL600
QNIPYNLTTN  DAHEFSETKT  PIGQLGVAYS  DLPVMEGEDI  QGRELDGTTS  SSWRNVVLKE660
LAMRYMTAAF  CNWNVTGKLR  TDDIEEIVRD  DVSKDIWLDK  FPGAMYEKLN  AWDVTRSGHG720
GEYEIQTGFG  WTNGVAIWIA  HVLGMKLDNP  VCPLTDPASA  KRLGALGELA  SSPRNEMHTQ780
L781

Predicted 3D structure by AlphaFold2 with pLDDT = 88.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPLSPVLWLA  LVFSKLSLSY  PFSQGSLVLN  DRSAYHAHAR  DAGMCRQRND  PNRVLVIPGP60
DVISQFSVCQ  GRNEFGELVS  DTSGTVYCNG  TLIHLWNDAR  DHRGDSKTFV  DRASNFSGSQ120
INLAIENILL  QRQFKASEFI  SEMEAMFQFN  NPGEELQEYD  NIRFPNTPLV  VSQIRPQAKV180
FRAWTKIVHH  YWNNLDRKMI  QNCIGDREET  VDAQLLPGPG  SPPANSDTET  YGYSRLETEK240
CATSIIRLEH  PFVIAGGRFR  EQYYWDSFFV  MEGMLAANMT  YLARTTLLNF  MDEIRSYGFI300
PNGGRKYYLN  RSQPPLFVHM  LYAYVHNTND  TAVLHGALPL  AEKELRWWSE  NRSIRVQSPS360
SPSKVHRVYH  YNVQADGPRP  ESYAEDWMTA  WCDDKPPSRE  YESMVYSELA  SGVESGWDYT420
ARWMGNPSTL  PEDRIEQMRR  VRIRRIIPVD  LNSILYRCHM  LMADLYQLAV  DDESPYAGQH480
KRRHLSAASN  LRTAILDLNW  SEARAAFYDF  GLDEANAPEI  PQTGHIGTFW  SGASLAPYWS540
EIWPDSVVRN  QSKAMEAFAG  VRDLLRRYEG  PLPATVTKSG  QQWDFPNAWP  PLQYIAIKAL600
QNIPYNLTTN  DAHEFSETKT  PIGQLGVAYS  DLPVMEGEDI  QGRELDGTTS  SSWRNVVLKE660
LAMRYMTAAF  CNWNVTGKLR  TDDIEEIVRD  DVSKDIWLDK  FPGAMYEKLN  AWDVTRSGHG720
GEYEIQTGFG  WTNGVAIWIA  HVLGMKLDNP  VCPLTDPASA  KRLGALGELA  SSPRNEMHTQ780
L781

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH37(104-612)

MPLSPVLWLA  LVFSKLSLSY  PFSQGSLVLN  DRSAYHAHAR  DAGMCRQRND  PNRVLVIPGP60
DVISQFSVCQ  GRNEFGELVS  DTSGTVYCNG  TLIHLWNDAR  DHRGDSKTFV  DRASNFSGSQ120
INLAIENILL  QRQFKASEFI  SEMEAMFQFN  NPGEELQEYD  NIRFPNTPLV  VSQIRPQAKV180
FRAWTKIVHH  YWNNLDRKMI  QNCIGDREET  VDAQLLPGPG  SPPANSDTET  YGYSRLETEK240
CATSIIRLEH  PFVIAGGRFR  EQYYWDSFFV  MEGMLAANMT  YLARTTLLNF  MDEIRSYGFI300
PNGGRKYYLN  RSQPPLFVHM  LYAYVHNTND  TAVLHGALPL  AEKELRWWSE  NRSIRVQSPS360
SPSKVHRVYH  YNVQADGPRP  ESYAEDWMTA  WCDDKPPSRE  YESMVYSELA  SGVESGWDYT420
ARWMGNPSTL  PEDRIEQMRR  VRIRRIIPVD  LNSILYRCHM  LMADLYQLAV  DDESPYAGQH480
KRRHLSAASN  LRTAILDLNW  SEARAAFYDF  GLDEANAPEI  PQTGHIGTFW  SGASLAPYWS540
EIWPDSVVRN  QSKAMEAFAG  VRDLLRRYEG  PLPATVTKSG  QQWDFPNAWP  PLQYIAIKAL600
QNIPYNLTTN  DAHEFSETKT  PIGQLGVAYS  DLPVMEGEDI  QGRELDGTTS  SSWRNVVLKE660
LAMRYMTAAF  CNWNVTGKLR  TDDIEEIVRD  DVSKDIWLDK  FPGAMYEKLN  AWDVTRSGHG720
GEYEIQTGFG  WTNGVAIWIA  HVLGMKLDNP  VCPLTDPASA  KRLGALGELA  SSPRNEMHTQ780
L781

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help