CAZyme3D

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Entry ID

Information for CAZyme ID: QRV79035.1

Basic Information

GenBank IDQRV79035.1
FamilyAA3_1
Sequence Length586
UniProt IDA0A8H8IZM4(100,100)Download
Average pLDDT?84.68
CAZy50 ID54250
CAZy50 RepYes, QRV79035.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID170446
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderCantharellales
FamilyCeratobasidiaceae
GenusCeratobasidium
SpeciesCeratobasidium sp. AG-Ba

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLEHIIFVSL  LASSALCFSR  GPRPDFFNTA  AQNNTLYDYI  VVGAGPTGIV  VADRLSESGK60
QVLLIERGGP  STAQTGGTDV  PPWANGTQLT  RFDIPALYEG  MYQGNDRYWW  CDDMDPLAGC120
LVGGCSAING  MLYWYPTDFE  YSTSNGWPSG  WQSVSAYMDK  LKARLPSTNN  PSKDGNFYLN180
QVYEVLGSML  DKQGYTGIVA  NDQRNNKDRV  YSHTNYYIQN  ATRTGPMDTY  LKTAKARPNF240
TLLMNTKVIS  VLRDGSHITG  VQTNDSTVGN  NGAIGVNPDG  RVILAAGVFG  TAKILFQSGI300
GPSDMLSLTA  SNSSVSSYMP  PASQYINLPV  GQNMTDNPAV  RAVFVHPSID  NYNGYASIYT360
SPRPADVALY  LPSGSGPLAS  PSAHANFWRA  YHGSDGRTRY  GVDSDLRGVV  LKDPWLTDPE420
DKTTLTNGFT  DFLSTYQQVP  GLQLVTPDSS  VSLSSYVGET  ASGSSHWVGS  TKIGTSPSNS480
VVDQNTKVWN  TGQSILAYEE  SLDPQYCQSD  NLHIVDAGIY  PGVATGNPMG  SFMVMAEMAA540
DKILAQTGTG  SPQQTPNPGN  SNSAVRNRIY  GLSVHIFWAI  IIVSAF586

Predicted 3D structure by AlphaFold2 with pLDDT = 84.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLEHIIFVSL  LASSALCFSR  GPRPDFFNTA  AQNNTLYDYI  VVGAGPTGIV  VADRLSESGK60
QVLLIERGGP  STAQTGGTDV  PPWANGTQLT  RFDIPALYEG  MYQGNDRYWW  CDDMDPLAGC120
LVGGCSAING  MLYWYPTDFE  YSTSNGWPSG  WQSVSAYMDK  LKARLPSTNN  PSKDGNFYLN180
QVYEVLGSML  DKQGYTGIVA  NDQRNNKDRV  YSHTNYYIQN  ATRTGPMDTY  LKTAKARPNF240
TLLMNTKVIS  VLRDGSHITG  VQTNDSTVGN  NGAIGVNPDG  RVILAAGVFG  TAKILFQSGI300
GPSDMLSLTA  SNSSVSSYMP  PASQYINLPV  GQNMTDNPAV  RAVFVHPSID  NYNGYASIYT360
SPRPADVALY  LPSGSGPLAS  PSAHANFWRA  YHGSDGRTRY  GVDSDLRGVV  LKDPWLTDPE420
DKTTLTNGFT  DFLSTYQQVP  GLQLVTPDSS  VSLSSYVGET  ASGSSHWVGS  TKIGTSPSNS480
VVDQNTKVWN  TGQSILAYEE  SLDPQYCQSD  NLHIVDAGIY  PGVATGNPMG  SFMVMAEMAA540
DKILAQTGTG  SPQQTPNPGN  SNSAVRNRIY  GLSVHIFWAI  IIVSAF586

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_1(29-400)

MLEHIIFVSL  LASSALCFSR  GPRPDFFNTA  AQNNTLYDYI  VVGAGPTGIV  VADRLSESGK60
QVLLIERGGP  STAQTGGTDV  PPWANGTQLT  RFDIPALYEG  MYQGNDRYWW  CDDMDPLAGC120
LVGGCSAING  MLYWYPTDFE  YSTSNGWPSG  WQSVSAYMDK  LKARLPSTNN  PSKDGNFYLN180
QVYEVLGSML  DKQGYTGIVA  NDQRNNKDRV  YSHTNYYIQN  ATRTGPMDTY  LKTAKARPNF240
TLLMNTKVIS  VLRDGSHITG  VQTNDSTVGN  NGAIGVNPDG  RVILAAGVFG  TAKILFQSGI300
GPSDMLSLTA  SNSSVSSYMP  PASQYINLPV  GQNMTDNPAV  RAVFVHPSID  NYNGYASIYT360
SPRPADVALY  LPSGSGPLAS  PSAHANFWRA  YHGSDGRTRY  GVDSDLRGVV  LKDPWLTDPE420
DKTTLTNGFT  DFLSTYQQVP  GLQLVTPDSS  VSLSSYVGET  ASGSSHWVGS  TKIGTSPSNS480
VVDQNTKVWN  TGQSILAYEE  SLDPQYCQSD  NLHIVDAGIY  PGVATGNPMG  SFMVMAEMAA540
DKILAQTGTG  SPQQTPNPGN  SNSAVRNRIY  GLSVHIFWAI  IIVSAF586

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help