CAZyme3D

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Entry ID

Information for CAZyme ID: QRV73176.1

Basic Information

GenBank IDQRV73176.1
FamilyAA3_4
Sequence Length505
UniProt IDA0A8H8IL59(100,100)Download
Average pLDDT?54.39
CAZy50 ID67824
CAZy50 RepYes, QRV73176.1
Structure ClusterSC_AA3_clus58
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID170446
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderCantharellales
FamilyCeratobasidiaceae
GenusCeratobasidium
SpeciesCeratobasidium sp. AG-Ba

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVRRWPTFPN  PVYDPKTPYE  DEKRVPLHRV  HSEMDGFGIN  GVDVFIAGSG  PVGATYAGKL60
VDAGLGVVMC  ETGATAPSLS  QKDLNKIEYQ  KDIDRFVNGI  NGALSPVSVS  SNRAFVDTLD120
PTSRNDDNSF  VSNGKNPKQK  ESFNVSAQAV  TPGTGCIAIP  WTCAVPHFLK  GIEGPVIHPD180
DISGGGKDDK  EWESELVYRS  ETEFNGLSIR  HTLVLNTLKE  EPNINSSGGD  PKPEDGQGQS240
SISGGETNLE  RPPSQKGREY  SSLPLAARRL  TNSPRYYYDD  LIVQQHVFEG  KRKTLGIEKA300
GVETFRKKFR  HLTNHQRPRD  PGSAGSACYS  APHFRGLAEH  ELLQAKYFVT  AAGAVATPQI360
LYNSGLKSFG  GNEINAIQKS  PMLPALGKYI  IEQPMAFSQV  VLKKSLVDRV  PNNAWNSPNL420
FVAGNGVIDT  AFAANPTLTS  MALAICGAER  IAQIERARQV  TGFEEYFEDG  EIKHRAVPGT480
VEGLFKRVVK  RSYRPAWPPK  QTVTI505

Predicted 3D structure by AlphaFold2 with pLDDT = 54.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVRRWPTFPN  PVYDPKTPYE  DEKRVPLHRV  HSEMDGFGIN  GVDVFIAGSG  PVGATYAGKL60
VDAGLGVVMC  ETGATAPSLS  QKDLNKIEYQ  KDIDRFVNGI  NGALSPVSVS  SNRAFVDTLD120
PTSRNDDNSF  VSNGKNPKQK  ESFNVSAQAV  TPGTGCIAIP  WTCAVPHFLK  GIEGPVIHPD180
DISGGGKDDK  EWESELVYRS  ETEFNGLSIR  HTLVLNTLKE  EPNINSSGGD  PKPEDGQGQS240
SISGGETNLE  RPPSQKGREY  SSLPLAARRL  TNSPRYYYDD  LIVQQHVFEG  KRKTLGIEKA300
GVETFRKKFR  HLTNHQRPRD  PGSAGSACYS  APHFRGLAEH  ELLQAKYFVT  AAGAVATPQI360
LYNSGLKSFG  GNEINAIQKS  PMLPALGKYI  IEQPMAFSQV  VLKKSLVDRV  PNNAWNSPNL420
FVAGNGVIDT  AFAANPTLTS  MALAICGAER  IAQIERARQV  TGFEEYFEDG  EIKHRAVPGT480
VEGLFKRVVK  RSYRPAWPPK  QTVTI505

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_4(41-416)

MVRRWPTFPN  PVYDPKTPYE  DEKRVPLHRV  HSEMDGFGIN  GVDVFIAGSG  PVGATYAGKL60
VDAGLGVVMC  ETGATAPSLS  QKDLNKIEYQ  KDIDRFVNGI  NGALSPVSVS  SNRAFVDTLD120
PTSRNDDNSF  VSNGKNPKQK  ESFNVSAQAV  TPGTGCIAIP  WTCAVPHFLK  GIEGPVIHPD180
DISGGGKDDK  EWESELVYRS  ETEFNGLSIR  HTLVLNTLKE  EPNINSSGGD  PKPEDGQGQS240
SISGGETNLE  RPPSQKGREY  SSLPLAARRL  TNSPRYYYDD  LIVQQHVFEG  KRKTLGIEKA300
GVETFRKKFR  HLTNHQRPRD  PGSAGSACYS  APHFRGLAEH  ELLQAKYFVT  AAGAVATPQI360
LYNSGLKSFG  GNEINAIQKS  PMLPALGKYI  IEQPMAFSQV  VLKKSLVDRV  PNNAWNSPNL420
FVAGNGVIDT  AFAANPTLTS  MALAICGAER  IAQIERARQV  TGFEEYFEDG  EIKHRAVPGT480
VEGLFKRVVK  RSYRPAWPPK  QTVTI505

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help