CAZyme3D

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Entry ID

Information for CAZyme ID: QRQ54585.1

Basic Information

GenBank IDQRQ54585.1
FamilyGH5_4
Sequence Length502
UniProt IDA7LXT7(100,100)Download
Average pLDDT?93.96
CAZy50 ID68381
CAZy50 RepYes, QRQ54585.1
Structure ClusterSC_GH5_clus240
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28116
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides ovatus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEKQSFSDGL  FSPLGIKRVI  FMLVLLTTSF  ISCSNSDEKG  GSLEVAQEYR  NLEFDARGSR60
QTIQIDGPAE  WHISTSESWC  KSSHTIGEGK  QYVNITVEAN  DTQKERTATV  TVSASGAPDI120
IINVKQSLYS  VPAYDEYIAP  DNTGMRDLTS  MQLSALMKAG  VNVGNTFEAV  IVGNDGSLSG180
DETCWGNPTP  NKVLFEGIKA  AGFDVVRIPV  AYSHQFEDAA  TYKIKSAWMD  KVEAAVKAAL240
DAGLYVIINI  HWEGGWLNHP  VDANKEALDE  RLEAMWKQIA  LRFRDYDDRL  LFAGTNEVNN300
DDANGAQPTE  ENYRVQNGFN  QVFVNTVRAT  GGRNHYRHLI  VQAYNTDVAK  AVAHFTMPLD360
IVQNRIFLEC  HYYDPYDFTI  MPNDENFKSQ  WGAAFAGGDV  SATGQEGDIE  ATLSSLNVFI420
NNNVPVIIGE  YGPTLRDQLT  GEALENHLKS  RNDYIEYVVK  TCVKNKLVPL  YWDAGYTEKL480
FDRTTGQPHN  AASIAAIMKG  LN502

Predicted 3D structure by AlphaFold2 with pLDDT = 93.96 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEKQSFSDGL  FSPLGIKRVI  FMLVLLTTSF  ISCSNSDEKG  GSLEVAQEYR  NLEFDARGSR60
QTIQIDGPAE  WHISTSESWC  KSSHTIGEGK  QYVNITVEAN  DTQKERTATV  TVSASGAPDI120
IINVKQSLYS  VPAYDEYIAP  DNTGMRDLTS  MQLSALMKAG  VNVGNTFEAV  IVGNDGSLSG180
DETCWGNPTP  NKVLFEGIKA  AGFDVVRIPV  AYSHQFEDAA  TYKIKSAWMD  KVEAAVKAAL240
DAGLYVIINI  HWEGGWLNHP  VDANKEALDE  RLEAMWKQIA  LRFRDYDDRL  LFAGTNEVNN300
DDANGAQPTE  ENYRVQNGFN  QVFVNTVRAT  GGRNHYRHLI  VQAYNTDVAK  AVAHFTMPLD360
IVQNRIFLEC  HYYDPYDFTI  MPNDENFKSQ  WGAAFAGGDV  SATGQEGDIE  ATLSSLNVFI420
NNNVPVIIGE  YGPTLRDQLT  GEALENHLKS  RNDYIEYVVK  TCVKNKLVPL  YWDAGYTEKL480
FDRTTGQPHN  AASIAAIMKG  LN502

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(182-475)

MEKQSFSDGL  FSPLGIKRVI  FMLVLLTTSF  ISCSNSDEKG  GSLEVAQEYR  NLEFDARGSR60
QTIQIDGPAE  WHISTSESWC  KSSHTIGEGK  QYVNITVEAN  DTQKERTATV  TVSASGAPDI120
IINVKQSLYS  VPAYDEYIAP  DNTGMRDLTS  MQLSALMKAG  VNVGNTFEAV  IVGNDGSLSG180
DETCWGNPTP  NKVLFEGIKA  AGFDVVRIPV  AYSHQFEDAA  TYKIKSAWMD  KVEAAVKAAL240
DAGLYVIINI  HWEGGWLNHP  VDANKEALDE  RLEAMWKQIA  LRFRDYDDRL  LFAGTNEVNN300
DDANGAQPTE  ENYRVQNGFN  QVFVNTVRAT  GGRNHYRHLI  VQAYNTDVAK  AVAHFTMPLD360
IVQNRIFLEC  HYYDPYDFTI  MPNDENFKSQ  WGAAFAGGDV  SATGQEGDIE  ATLSSLNVFI420
NNNVPVIIGE  YGPTLRDQLT  GEALENHLKS  RNDYIEYVVK  TCVKNKLVPL  YWDAGYTEKL480
FDRTTGQPHN  AASIAAIMKG  LN502

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help