Information for CAZyme ID: QRM29889.1
Basic Information
GenBank ID | QRM29889.1 |
Family | GH2 |
Sequence Length | 916 |
UniProt ID | A0A974T441(100,100)![]() |
Average pLDDT? | 95.13 |
CAZy50 ID | 18421 |
CAZy50 Rep | Yes, QRM29889.1 |
Structure Cluster | SC_GH2_clus107 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2807101 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Hyphomicrobiales |
Family | Methylobacteriaceae |
Genus | Microvirga |
Species | Microvirga sp. VF16 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MQDNRISLDG TWEFLHVADD RLSGPAEVRQ ITVPSPWQAQ FADLRMRAGI GIYRRTIEID | 60 |
EAWLHDSVWI RFGAVFHNTK VFINGEMVGH NEGGFLPFSF DVTAYLKPGA NEIKVRVDSP | 120 |
TDNPAEFPDS PFAEIPFGKQ SWYGPLSGIW QSVCLERRIS DHMSRVRLVP NLTTGRVTSG | 180 |
VFFARPLTDA TQIRIEVTDP SGDVVLDEMH ETQVGVTSMP FEFTLDDVRA WSPDHPNLYR | 240 |
IRLELRRNGE VRDEIADHFG FRSIETRNGK FYLNGEPLYL RSALDQDYYP DTICTVPSVE | 300 |
FLEDQFRKVK ELGLNCLRCH IKAADPRYYE VADRMGVLIW TELPNGGMAT DRSRGRKEKL | 360 |
LKGIVDRDGN HPSIIIWTII NENWGVDLVN DADHRDWLKR TFAWLKAYDP TRLVVDNSPL | 420 |
APSFHVESDI ADYHFYAAYP DHRAQWDIFV DELSSRASWL YSPHGDAVIT GREPLMCSEF | 480 |
GNWGLPYPKD LRDEKGEEPW WFETGHDWGE GVMYAHGVEN RFSDWSMDRV FGDLRRFVIA | 540 |
AQWQQFRALK YEIESMRRKP NLAGYVITEL HDCHWESNGL LDMRRNPRVF HELFHIINTD | 600 |
TVIAPKWERA SYWSGETVAL ELCIAHGAGQ PLEDCQLEIS VCSETERLPL PVIKAPDVFN | 660 |
LGRVEIPLPA VDEPSLRRIS FDLRAPGGKL IAHNHHDIAI HSKRTKPVHA RELVWSPDED | 720 |
IRERFRALGY NIARAFEEST LIVSRTHNKA IADHVRAGAK LLLLPEEDMT LYPFFPHWQA | 780 |
VRVQARAGTL WSGDWASSFG WLRRSGHFAR FPSGPLLDET MDRVLPDYVI VNCNLLDFQA | 840 |
RVFAGLVVGW IHKPVALGVE RSYGRGRMVT STLRLFRDQP LADPTATLLT DALVELAVES | 900 |
RAARLEEAVR AAEAAA | 916 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.13 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MQDNRISLDG TWEFLHVADD RLSGPAEVRQ ITVPSPWQAQ FADLRMRAGI GIYRRTIEID | 60 |
EAWLHDSVWI RFGAVFHNTK VFINGEMVGH NEGGFLPFSF DVTAYLKPGA NEIKVRVDSP | 120 |
TDNPAEFPDS PFAEIPFGKQ SWYGPLSGIW QSVCLERRIS DHMSRVRLVP NLTTGRVTSG | 180 |
VFFARPLTDA TQIRIEVTDP SGDVVLDEMH ETQVGVTSMP FEFTLDDVRA WSPDHPNLYR | 240 |
IRLELRRNGE VRDEIADHFG FRSIETRNGK FYLNGEPLYL RSALDQDYYP DTICTVPSVE | 300 |
FLEDQFRKVK ELGLNCLRCH IKAADPRYYE VADRMGVLIW TELPNGGMAT DRSRGRKEKL | 360 |
LKGIVDRDGN HPSIIIWTII NENWGVDLVN DADHRDWLKR TFAWLKAYDP TRLVVDNSPL | 420 |
APSFHVESDI ADYHFYAAYP DHRAQWDIFV DELSSRASWL YSPHGDAVIT GREPLMCSEF | 480 |
GNWGLPYPKD LRDEKGEEPW WFETGHDWGE GVMYAHGVEN RFSDWSMDRV FGDLRRFVIA | 540 |
AQWQQFRALK YEIESMRRKP NLAGYVITEL HDCHWESNGL LDMRRNPRVF HELFHIINTD | 600 |
TVIAPKWERA SYWSGETVAL ELCIAHGAGQ PLEDCQLEIS VCSETERLPL PVIKAPDVFN | 660 |
LGRVEIPLPA VDEPSLRRIS FDLRAPGGKL IAHNHHDIAI HSKRTKPVHA RELVWSPDED | 720 |
IRERFRALGY NIARAFEEST LIVSRTHNKA IADHVRAGAK LLLLPEEDMT LYPFFPHWQA | 780 |
VRVQARAGTL WSGDWASSFG WLRRSGHFAR FPSGPLLDET MDRVLPDYVI VNCNLLDFQA | 840 |
RVFAGLVVGW IHKPVALGVE RSYGRGRMVT STLRLFRDQP LADPTATLLT DALVELAVES | 900 |
RAARLEEAVR AAEAAA | 916 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.