Information for CAZyme ID: QRK10898.1
Basic Information
| GenBank ID | QRK10898.1 |
| Family | CBM13 |
| Sequence Length | 574 |
| UniProt ID | QRK10898.1(MOD) |
| Average pLDDT? | 94.81 |
| CAZy50 ID | 55995 |
| CAZy50 Rep | Yes, QRK10898.1 |
| Structure Cluster | SC_CBM13_clus58 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 83451 |
| Kingdom | Bacteria |
| Phylum | Myxococcota |
| Class | Myxococcia |
| Order | Myxococcales |
| Family | Archangiaceae |
| Genus | Archangium |
| Species | Archangium violaceum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKTKGLLRCL ALGMTVFLSD PAHATSGSFS TFTYNIAGLP EVLSSATSAR QDATERISCY | 60 |
| VKQFDFVNVQ EDFNYHAALY DTCDDHPYRS PTSGGAGIGS GLNSMSRFPY MDWERVSWNN | 120 |
| CNGVDCLTPK GFTIARTRLA EGVYVDIYNL HTQAQIEDAD LVARREDILQ ILGYIETHSA | 180 |
| GNAVIVMGDT NTRYTRSGDN MWEFLRRGFT DVWVSKVRHG DVPAEGTAAL VCSPAYTSPN | 240 |
| CEVVDKVLFR DNGFVGLQAL SFLIPTDTQN AAGEELSDHR GIKTTWSYST ASNRQLSDVW | 300 |
| GGPHGIAFND VYSLPDNPAV STLTIRSGNR VDRVEVTLSN GYIFSHGGTG GTESSLPLAS | 360 |
| NEYLTSLYLC SGSYNNTTRI FYTRFTTSAG RSLAGGKATS NCTTYTAPSG WQIVGFHGRA | 420 |
| GDEVDKLGVV YAPQVSKPAA AIYHQFVNRN SGRCLGISNG TMANGTQVQQ WACDGGDWQK | 480 |
| WSYDARSGLI RSKKDPRYCL DNGGSFSNGA RIQLWTCNGN ANQRFTVDTA AGTVRMRTHP | 540 |
| EQALEVYNLG TADGANVDTW TFWGGPGQLW NLTP | 574 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.81 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKTKGLLRCL ALGMTVFLSD PAHATSGSFS TFTYNIAGLP EVLSSATSAR QDATERISCY | 60 |
| VKQFDFVNVQ EDFNYHAALY DTCDDHPYRS PTSGGAGIGS GLNSMSRFPY MDWERVSWNN | 120 |
| CNGVDCLTPK GFTIARTRLA EGVYVDIYNL HTQAQIEDAD LVARREDILQ ILGYIETHSA | 180 |
| GNAVIVMGDT NTRYTRSGDN MWEFLRRGFT DVWVSKVRHG DVPAEGTAAL VCSPAYTSPN | 240 |
| CEVVDKVLFR DNGFVGLQAL SFLIPTDTQN AAGEELSDHR GIKTTWSYST ASNRQLSDVW | 300 |
| GGPHGIAFND VYSLPDNPAV STLTIRSGNR VDRVEVTLSN GYIFSHGGTG GTESSLPLAS | 360 |
| NEYLTSLYLC SGSYNNTTRI FYTRFTTSAG RSLAGGKATS NCTTYTAPSG WQIVGFHGRA | 420 |
| GDEVDKLGVV YAPQVSKPAA AIYHQFVNRN SGRCLGISNG TMANGTQVQQ WACDGGDWQK | 480 |
| WSYDARSGLI RSKKDPRYCL DNGGSFSNGA RIQLWTCNGN ANQRFTVDTA AGTVRMRTHP | 540 |
| EQALEVYNLG TADGANVDTW TFWGGPGQLW NLTP | 574 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.