CAZyme3D

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Entry ID

Information for CAZyme ID: QRF74995.1

Basic Information

GenBank IDQRF74995.1
FamilyGT2
Sequence Length262
UniProt IDA0A7U3D1L0(100,100)Download
Average pLDDT?87.19
CAZy50 ID168604
CAZy50 RepYes, QRF74995.1
Structure ClusterSC_GT2_clus837
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2268204
KingdomArchaea
PhylumCandidatus Thermoplasmatota
ClassThermoplasmata
OrderThermoplasmatales
Family
Genus
SpeciesThermoplasmatales archaeon

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MINATDIIPG  DTFFGGKPIR  IIVPTSSLES  EKFKKCLDSV  RRSQLPNNSI  LTAVVSSGPT60
FSFARSINYA  LAMVNDENVL  LLNDDCYVEP  TTIKNMVDSI  TSNDGVIGGL  LRYSNGKIQH120
NGGLLYFNTL  TIFFKDLTKG  APFNTIRSAL  EARRRGVKYV  RAFHRTTTRP  GSLDFVTGAL180
FFIPNAAFRK  IGLLDEDYVN  GFEDADYCLR  ARKMGLAVRV  EASASAVHEE  HASLNSVKSH240
FFDNISVFGK  KWKRSEVEAL  RD262

Predicted 3D structure by AlphaFold2 with pLDDT = 87.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MINATDIIPG  DTFFGGKPIR  IIVPTSSLES  EKFKKCLDSV  RRSQLPNNSI  LTAVVSSGPT60
FSFARSINYA  LAMVNDENVL  LLNDDCYVEP  TTIKNMVDSI  TSNDGVIGGL  LRYSNGKIQH120
NGGLLYFNTL  TIFFKDLTKG  APFNTIRSAL  EARRRGVKYV  RAFHRTTTRP  GSLDFVTGAL180
FFIPNAAFRK  IGLLDEDYVN  GFEDADYCLR  ARKMGLAVRV  EASASAVHEE  HASLNSVKSH240
FFDNISVFGK  KWKRSEVEAL  RD262

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(44-230)

MINATDIIPG  DTFFGGKPIR  IIVPTSSLES  EKFKKCLDSV  RRSQLPNNSI  LTAVVSSGPT60
FSFARSINYA  LAMVNDENVL  LLNDDCYVEP  TTIKNMVDSI  TSNDGVIGGL  LRYSNGKIQH120
NGGLLYFNTL  TIFFKDLTKG  APFNTIRSAL  EARRRGVKYV  RAFHRTTTRP  GSLDFVTGAL180
FFIPNAAFRK  IGLLDEDYVN  GFEDADYCLR  ARKMGLAVRV  EASASAVHEE  HASLNSVKSH240
FFDNISVFGK  KWKRSEVEAL  RD262

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help