CAZyme3D

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Entry ID

Information for CAZyme ID: QRD92317.1

Basic Information

GenBank IDQRD92317.1
FamilyGT31
Sequence Length483
UniProt IDA0A7G5KLE4(100,100)Download
Average pLDDT?86.69
CAZy50 ID72449
CAZy50 RepYes, QRD92317.1
Structure ClusterSC_GT31_clus176
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5059
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyAspergillaceae
GenusAspergillus
SpeciesAspergillus flavus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSSLSLRRTR  QRLKPVIAAS  VILATFTVFL  LSRTQPPQPH  VETVTFPSSS  GTGGVVNNDR60
NSSTCYVDAE  LLKSLGYNSS  AEYRRWEIAV  RRSKSHNGVS  DTLDVPVPKF  EILDLDTDDD120
RIYLPETQCA  PTATIEAPAA  KARADASHMV  FGVSTSLERL  SDSLGPFAHW  AGGTGARIFA180
MVDVVPKKEK  LKVLNRAQEL  DIKLTIIESK  EEWLDRYFRL  TKVLWENRDA  HTQWAVIIDD240
DTFFPSMSNL  VERLATYDAT  KPYYIGAPTE  NWGQMNIFSF  MAYGGAGIFL  SIPLLQQMNE300
VYDICYAFKD  HGDKRISQCI  YQHTTTKLTW  ERGLFQVDFG  GDVTGFFESG  RPLPLSIHHW360
KSWYDVDVVA  LGRAAAICGD  DCQLQRWRIS  DRWYFINGFS  LVQYSSPMND  MIGMEQTWDP420
SDWARDQGYA  FSLGPLRPKD  EKKVSFRMKS  AVLEGQRLRQ  IYVHEPDSGS  PRILEVVWTV480
ADE483

Predicted 3D structure by AlphaFold2 with pLDDT = 86.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSSLSLRRTR  QRLKPVIAAS  VILATFTVFL  LSRTQPPQPH  VETVTFPSSS  GTGGVVNNDR60
NSSTCYVDAE  LLKSLGYNSS  AEYRRWEIAV  RRSKSHNGVS  DTLDVPVPKF  EILDLDTDDD120
RIYLPETQCA  PTATIEAPAA  KARADASHMV  FGVSTSLERL  SDSLGPFAHW  AGGTGARIFA180
MVDVVPKKEK  LKVLNRAQEL  DIKLTIIESK  EEWLDRYFRL  TKVLWENRDA  HTQWAVIIDD240
DTFFPSMSNL  VERLATYDAT  KPYYIGAPTE  NWGQMNIFSF  MAYGGAGIFL  SIPLLQQMNE300
VYDICYAFKD  HGDKRISQCI  YQHTTTKLTW  ERGLFQVDFG  GDVTGFFESG  RPLPLSIHHW360
KSWYDVDVVA  LGRAAAICGD  DCQLQRWRIS  DRWYFINGFS  LVQYSSPMND  MIGMEQTWDP420
SDWARDQGYA  FSLGPLRPKD  EKKVSFRMKS  AVLEGQRLRQ  IYVHEPDSGS  PRILEVVWTV480
ADE483

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MSSLSLRRTR  QRLKPVIAAS  VILATFTVFL  LSRTQPPQPH  VETVTFPSSS  GTGGVVNNDR60
NSSTCYVDAE  LLKSLGYNSS  AEYRRWEIAV  RRSKSHNGVS  DTLDVPVPKF  EILDLDTDDD120
RIYLPETQCA  PTATIEAPAA  KARADASHMV  FGVSTSLERL  SDSLGPFAHW  AGGTGARIFA180
MVDVVPKKEK  LKVLNRAQEL  DIKLTIIESK  EEWLDRYFRL  TKVLWENRDA  HTQWAVIIDD240
DTFFPSMSNL  VERLATYDAT  KPYYIGAPTE  NWGQMNIFSF  MAYGGAGIFL  SIPLLQQMNE300
VYDICYAFKD  HGDKRISQCI  YQHTTTKLTW  ERGLFQVDFG  GDVTGFFESG  RPLPLSIHHW360
KSWYDVDVVA  LGRAAAICGD  DCQLQRWRIS  DRWYFINGFS  LVQYSSPMND  MIGMEQTWDP420
SDWARDQGYA  FSLGPLRPKD  EKKVSFRMKS  AVLEGQRLRQ  IYVHEPDSGS  PRILEVVWTV480
ADE483

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help