CAZyme3D

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Entry ID

Information for CAZyme ID: QRC92667.1

Basic Information

GenBank IDQRC92667.1
FamilyAA3_2
Sequence Length583
UniProt IDA0A7U2HYF1(100,100)Download
Average pLDDT?91.50
CAZy50 ID54731
CAZy50 RepYes, QRC92667.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID321614
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderPleosporales
FamilyPhaeosphaeriaceae
GenusParastagonospora
SpeciesParastagonospora nodorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLYNMKRTSL  LALLFRIDPA  IAVPHPTQPA  PNGQPDYVII  GGGPAGFVLA  EQLSKNPKVN60
VVLLEAGPDT  AGVENIDDPG  LAPLLLQTPY  TWNYTCQPDP  NLNGVAPYLH  QGRGFGGGSA120
VNYLGHCRGS  PSVFDEWAKI  SKDDGLKWKN  FENDYKSVAY  YKETPLDYDP  HVNKSAYGNG180
PIEFTSPSEN  LGFVLSLIES  WKNVLKLPQV  DLNDGTGVGI  STGLTGIRAS  NHTRVFASQA240
YGWPMNGRPN  ARQLHDAEVT  KIGFEGKRAV  SVTYVNPITN  ATTTLRPKEI  IVAAGALGSP300
KLLMLSGVGP  AEQLKSHGIP  VVADIPQIGK  NLFDHHFAWM  EFEVPPSVET  LWQYTLNATF360
KDKAAADFNT  EGKGPLGVPN  GAAFAVSRIP  NEAFSGVNST  FHTSLPADRG  HLLFQYSSST420
LRSNGPNVST  ISPFVAVIQP  EAAGYMELAS  SNYRDQPLIH  PNYYGSESDK  AAILYGYKQL480
RKVVTDPALS  PVLLKEVYPG  ANVTSDEDLW  KAIQNASLTF  HHPLGTVALG  TVVEGKTWRI540
KGLQGIRVID  SSTFPSMPTC  HTMHTVYAYA  YHAAQLIKKQ  DKF583

Predicted 3D structure by AlphaFold2 with pLDDT = 91.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLYNMKRTSL  LALLFRIDPA  IAVPHPTQPA  PNGQPDYVII  GGGPAGFVLA  EQLSKNPKVN60
VVLLEAGPDT  AGVENIDDPG  LAPLLLQTPY  TWNYTCQPDP  NLNGVAPYLH  QGRGFGGGSA120
VNYLGHCRGS  PSVFDEWAKI  SKDDGLKWKN  FENDYKSVAY  YKETPLDYDP  HVNKSAYGNG180
PIEFTSPSEN  LGFVLSLIES  WKNVLKLPQV  DLNDGTGVGI  STGLTGIRAS  NHTRVFASQA240
YGWPMNGRPN  ARQLHDAEVT  KIGFEGKRAV  SVTYVNPITN  ATTTLRPKEI  IVAAGALGSP300
KLLMLSGVGP  AEQLKSHGIP  VVADIPQIGK  NLFDHHFAWM  EFEVPPSVET  LWQYTLNATF360
KDKAAADFNT  EGKGPLGVPN  GAAFAVSRIP  NEAFSGVNST  FHTSLPADRG  HLLFQYSSST420
LRSNGPNVST  ISPFVAVIQP  EAAGYMELAS  SNYRDQPLIH  PNYYGSESDK  AAILYGYKQL480
RKVVTDPALS  PVLLKEVYPG  ANVTSDEDLW  KAIQNASLTF  HHPLGTVALG  TVVEGKTWRI540
KGLQGIRVID  SSTFPSMPTC  HTMHTVYAYA  YHAAQLIKKQ  DKF583

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(36-579)

MLYNMKRTSL  LALLFRIDPA  IAVPHPTQPA  PNGQPDYVII  GGGPAGFVLA  EQLSKNPKVN60
VVLLEAGPDT  AGVENIDDPG  LAPLLLQTPY  TWNYTCQPDP  NLNGVAPYLH  QGRGFGGGSA120
VNYLGHCRGS  PSVFDEWAKI  SKDDGLKWKN  FENDYKSVAY  YKETPLDYDP  HVNKSAYGNG180
PIEFTSPSEN  LGFVLSLIES  WKNVLKLPQV  DLNDGTGVGI  STGLTGIRAS  NHTRVFASQA240
YGWPMNGRPN  ARQLHDAEVT  KIGFEGKRAV  SVTYVNPITN  ATTTLRPKEI  IVAAGALGSP300
KLLMLSGVGP  AEQLKSHGIP  VVADIPQIGK  NLFDHHFAWM  EFEVPPSVET  LWQYTLNATF360
KDKAAADFNT  EGKGPLGVPN  GAAFAVSRIP  NEAFSGVNST  FHTSLPADRG  HLLFQYSSST420
LRSNGPNVST  ISPFVAVIQP  EAAGYMELAS  SNYRDQPLIH  PNYYGSESDK  AAILYGYKQL480
RKVVTDPALS  PVLLKEVYPG  ANVTSDEDLW  KAIQNASLTF  HHPLGTVALG  TVVEGKTWRI540
KGLQGIRVID  SSTFPSMPTC  HTMHTVYAYA  YHAAQLIKKQ  DKF583

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help