CAZyme3D

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Entry ID

Information for CAZyme ID: QQT52692.1

Basic Information

GenBank IDQQT52692.1
FamilyGH88
Sequence Length418
UniProt IDA0A7G5E5M7(100,100)Download
Average pLDDT?93.88
CAZy50 ID89961
CAZy50 RepYes, QQT52692.1
Structure ClusterSC_GH88_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28454
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium multivorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKRKPGLKA  LFVITSSLIA  LSFTDQKPSF  IDTSFKAAEK  QYQFLEQAAE  KQHKFPRTLS60
PAGKLVGTDE  WDWTGGFFPG  SLWYIYNHTH  NKETEAAAIK  WTEALEKAKD  LDQHHDIGFV120
MYCSYGNAIK  YLKDPKKVAA  YKDILIHSAN  TALKRYNPQV  GVIKSWNEKK  SWDGKTLWKY180
PVIIDNMMNL  EMLCYVSDLT  GDTKYKDVAI  SHATQTMKNH  FRKDYSTYHV  VDYDGNGHAI240
HQQTNQGYAD  NSTWARGQAW  AIYGFTMMYR  ETKKPEFLKT  AKAAAKFYMT  HPNLPKDKIP300
YWDFNAGKPG  YKSDADFSSL  KLNFVPRDAS  AAAIVASALI  ELSTLTTGTE  SKSYLTFAQE360
SLQTLSGATY  FAKYASNGGF  LLQHSVGSLP  HHSEIDVPLT  YADYYYLEGL  TRLEQLKK418

Predicted 3D structure by AlphaFold2 with pLDDT = 93.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKRKPGLKA  LFVITSSLIA  LSFTDQKPSF  IDTSFKAAEK  QYQFLEQAAE  KQHKFPRTLS60
PAGKLVGTDE  WDWTGGFFPG  SLWYIYNHTH  NKETEAAAIK  WTEALEKAKD  LDQHHDIGFV120
MYCSYGNAIK  YLKDPKKVAA  YKDILIHSAN  TALKRYNPQV  GVIKSWNEKK  SWDGKTLWKY180
PVIIDNMMNL  EMLCYVSDLT  GDTKYKDVAI  SHATQTMKNH  FRKDYSTYHV  VDYDGNGHAI240
HQQTNQGYAD  NSTWARGQAW  AIYGFTMMYR  ETKKPEFLKT  AKAAAKFYMT  HPNLPKDKIP300
YWDFNAGKPG  YKSDADFSSL  KLNFVPRDAS  AAAIVASALI  ELSTLTTGTE  SKSYLTFAQE360
SLQTLSGATY  FAKYASNGGF  LLQHSVGSLP  HHSEIDVPLT  YADYYYLEGL  TRLEQLKK418

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH88(69-413)

MKKRKPGLKA  LFVITSSLIA  LSFTDQKPSF  IDTSFKAAEK  QYQFLEQAAE  KQHKFPRTLS60
PAGKLVGTDE  WDWTGGFFPG  SLWYIYNHTH  NKETEAAAIK  WTEALEKAKD  LDQHHDIGFV120
MYCSYGNAIK  YLKDPKKVAA  YKDILIHSAN  TALKRYNPQV  GVIKSWNEKK  SWDGKTLWKY180
PVIIDNMMNL  EMLCYVSDLT  GDTKYKDVAI  SHATQTMKNH  FRKDYSTYHV  VDYDGNGHAI240
HQQTNQGYAD  NSTWARGQAW  AIYGFTMMYR  ETKKPEFLKT  AKAAAKFYMT  HPNLPKDKIP300
YWDFNAGKPG  YKSDADFSSL  KLNFVPRDAS  AAAIVASALI  ELSTLTTGTE  SKSYLTFAQE360
SLQTLSGATY  FAKYASNGGF  LLQHSVGSLP  HHSEIDVPLT  YADYYYLEGL  TRLEQLKK418

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help